Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07645

Experiment: R2A pH5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH5
1,652,411	+		LRK54_RS07640	0.82	+0.3
1,652,412	-		LRK54_RS07640	0.82	-1.8
1,652,412	-		LRK54_RS07640	0.82	-1.4
1,652,453	+		LRK54_RS07640	0.83	+0.1
1,652,453	+		LRK54_RS07640	0.83	+0.1
1,652,453	+		LRK54_RS07640	0.83	-0.1
1,652,453	+		LRK54_RS07640	0.83	-0.1
1,652,453	+		LRK54_RS07640	0.83	+1.5
1,652,453	+		LRK54_RS07640	0.83	+1.7
1,652,453	+		LRK54_RS07640	0.83	-0.7
1,652,453	+		LRK54_RS07640	0.83	-0.9
1,652,453	+		LRK54_RS07640	0.83	-0.4
1,652,453	+		LRK54_RS07640	0.83	-0.9
1,652,453	+		LRK54_RS07640	0.83	+0.2
1,652,453	+		LRK54_RS07640	0.83	-0.1
1,652,453	+		LRK54_RS07640	0.83	+0.7
1,652,453	+		LRK54_RS07640	0.83	-1.1
1,652,453	+		LRK54_RS07640	0.83	+0.6
1,652,453	+		LRK54_RS07640	0.83	-1.1
1,652,453	+		LRK54_RS07640	0.83	-0.8
1,652,453	+		LRK54_RS07640	0.83	+0.9
1,652,454	-		LRK54_RS07640	0.83	+0.5
1,652,454	-		LRK54_RS07640	0.83	-0.7
1,652,454	-		LRK54_RS07640	0.83	+0.9
1,652,454	-		LRK54_RS07640	0.83	-0.2
1,652,454	-		LRK54_RS07640	0.83	-0.4
1,652,454	-		LRK54_RS07640	0.83	-0.3
1,652,454	-		LRK54_RS07640	0.83	-0.5
1,652,454	-		LRK54_RS07640	0.83	-1.1
1,652,454	-		LRK54_RS07640	0.83	-0.9
1,652,454	-		LRK54_RS07640	0.83	-1.5
1,652,454	-		LRK54_RS07640	0.83	+0.4
1,652,454	-		LRK54_RS07640	0.83	-0.7
1,652,454	-		LRK54_RS07640	0.83	+0.1
1,652,454	-		LRK54_RS07640	0.83	+0.1
1,652,454	-		LRK54_RS07640	0.83	-0.1
1,652,454	-		LRK54_RS07640	0.83	+0.4
1,652,454	-		LRK54_RS07640	0.83	-0.4
1,652,454	-		LRK54_RS07640	0.83	+0.2
1,652,454	-		LRK54_RS07640	0.83	-0.8
1,652,454	-		LRK54_RS07640	0.83	-0.2
1,652,467	-		LRK54_RS07640	0.84	+0.2
1,652,498	+		LRK54_RS07640	0.84	+0.2
1,652,498	+		LRK54_RS07640	0.84	-1.4
1,652,498	+		LRK54_RS07640	0.84	-0.6
1,652,498	+		LRK54_RS07640	0.84	+0.9
1,652,498	+		LRK54_RS07640	0.84	+0.5
1,652,498	+		LRK54_RS07640	0.84	+0.2
1,652,498	+		LRK54_RS07640	0.84	-2.0
1,652,498	+		LRK54_RS07640	0.84	-1.2
1,652,498	+		LRK54_RS07640	0.84	+0.3
1,652,499	-		LRK54_RS07640	0.84	-1.6
1,652,499	-		LRK54_RS07640	0.84	-1.8
1,652,499	-		LRK54_RS07640	0.84	-0.9
1,652,499	-		LRK54_RS07640	0.84	+1.3
1,652,499	-		LRK54_RS07640	0.84	-1.9
1,652,499	-		LRK54_RS07640	0.84	+1.5
1,652,499	-		LRK54_RS07640	0.84	-0.7
1,652,537	+		LRK54_RS07640	0.85	+0.4
1,652,537	+		LRK54_RS07640	0.85	+2.3
1,652,537	+		LRK54_RS07640	0.85	-0.8
1,652,537	+		LRK54_RS07640	0.85	+0.1
1,652,537	+		LRK54_RS07640	0.85	-2.6
1,652,538	-		LRK54_RS07640	0.85	-1.0
1,652,538	-		LRK54_RS07640	0.85	-0.8
1,652,549	+		LRK54_RS07640	0.85	-0.5
1,652,549	+		LRK54_RS07640	0.85	-1.1
1,652,550	-		LRK54_RS07640	0.85	+0.4
1,652,550	-		LRK54_RS07640	0.85	-2.5
1,652,618	+		LRK54_RS07640	0.87	+0.3
1,652,618	+		LRK54_RS07640	0.87	+0.1
1,652,618	+		LRK54_RS07640	0.87	-1.2
1,652,618	+		LRK54_RS07640	0.87	-1.1
1,652,618	+		LRK54_RS07640	0.87	-0.8
1,652,618	+		LRK54_RS07640	0.87	+0.2
1,652,618	+		LRK54_RS07640	0.87	+0.4
1,652,618	+		LRK54_RS07640	0.87	-0.1
1,652,618	+		LRK54_RS07640	0.87	-0.2
1,652,618	+		LRK54_RS07640	0.87	-1.5
1,652,618	+		LRK54_RS07640	0.87	+2.5
1,652,619	-		LRK54_RS07640	0.87	-0.4
1,652,619	-		LRK54_RS07640	0.87	-1.0
1,652,619	-		LRK54_RS07640	0.87	-0.6
1,652,619	-		LRK54_RS07640	0.87	+0.4
1,652,619	-		LRK54_RS07640	0.87	+0.1
1,652,619	-		LRK54_RS07640	0.87	+0.2
1,652,619	-		LRK54_RS07640	0.87	+0.7
1,652,619	-		LRK54_RS07640	0.87	+0.0
1,652,619	-		LRK54_RS07640	0.87	+0.2
1,652,619	-		LRK54_RS07640	0.87	-2.4
1,652,619	-		LRK54_RS07640	0.87	-1.7
1,652,619	-		LRK54_RS07640	0.87	+1.0
1,652,619	-		LRK54_RS07640	0.87	-1.3
1,652,619	-		LRK54_RS07640	0.87	-0.7
1,652,619	-		LRK54_RS07640	0.87	+0.1
1,652,619	-		LRK54_RS07640	0.87	+0.0
1,652,619	-		LRK54_RS07640	0.87	+2.3
1,652,619	-		LRK54_RS07640	0.87	+0.7
1,652,621	+		LRK54_RS07640	0.87	-0.5
1,652,621	+		LRK54_RS07640	0.87	-0.4
1,652,621	+		LRK54_RS07640	0.87	+1.6
1,652,621	+		LRK54_RS07640	0.87	+0.1
1,652,622	-		LRK54_RS07640	0.87	-0.0
1,652,622	-		LRK54_RS07640	0.87	+0.7
1,652,622	-		LRK54_RS07640	0.87	+0.7
1,652,645	+		LRK54_RS07640	0.87	-1.7
1,652,645	+		LRK54_RS07640	0.87	+0.7
1,652,645	+		LRK54_RS07640	0.87	+0.6
1,652,645	+		LRK54_RS07640	0.87	+3.0
1,652,645	+		LRK54_RS07640	0.87	+0.5
1,652,645	+		LRK54_RS07640	0.87	-0.6
1,652,645	+		LRK54_RS07640	0.87	+1.3
1,652,645	+		LRK54_RS07640	0.87	+0.1
1,652,645	+		LRK54_RS07640	0.87	-0.5
1,652,645	+		LRK54_RS07640	0.87	+0.2
1,652,645	+		LRK54_RS07640	0.87	-0.3
1,652,645	+		LRK54_RS07640	0.87	+0.4
1,652,645	+		LRK54_RS07640	0.87	-0.6
1,652,645	+		LRK54_RS07640	0.87	-0.9
1,652,645	+		LRK54_RS07640	0.87	-0.9
1,652,645	+		LRK54_RS07640	0.87	-0.5
1,652,645	+		LRK54_RS07640	0.87	-0.1
1,652,645	+		LRK54_RS07640	0.87	+1.0
1,652,645	+		LRK54_RS07640	0.87	-0.0
1,652,645	+		LRK54_RS07640	0.87	-0.8
1,652,645	+		LRK54_RS07640	0.87	-0.5
1,652,645	+		LRK54_RS07640	0.87	-0.7
1,652,646	-		LRK54_RS07640	0.87	+0.9
1,652,646	-		LRK54_RS07640	0.87	-0.8
1,652,646	-		LRK54_RS07640	0.87	-2.5
1,652,646	-		LRK54_RS07640	0.87	+0.2
1,652,646	-		LRK54_RS07640	0.87	-0.8
1,652,646	-		LRK54_RS07640	0.87	+1.1
1,652,646	-		LRK54_RS07640	0.87	+4.3
1,652,646	-		LRK54_RS07640	0.87	+0.4
1,652,646	-		LRK54_RS07640	0.87	-0.3
1,652,646	-		LRK54_RS07640	0.87	-0.3
1,652,646	-		LRK54_RS07640	0.87	+1.2
1,652,646	-		LRK54_RS07640	0.87	-0.2
1,652,646	-		LRK54_RS07640	0.87	-0.7
1,652,646	-		LRK54_RS07640	0.87	+0.8
1,652,646	-		LRK54_RS07640	0.87	-1.1
1,652,834	+				-0.1
1,652,834	+				+0.7
1,652,834	+				-0.1
1,652,834	+				-0.7
1,652,835	-				-0.2
1,652,835	-				-0.3
1,652,835	-				+0.1
1,652,835	-				-1.7
1,652,835	-				+1.7
1,652,835	-				-0.9
1,652,909	+				-0.5
1,652,916	+				-0.9
1,652,916	+				-0.3
1,652,916	+				+0.4
1,652,917	-				+0.7
1,652,917	-				-0.3
1,653,272	+				-0.9
1,653,272	+				-0.1
1,653,272	+				+0.3
1,653,272	+				-0.2
1,653,272	+				-1.3
1,653,272	+				-0.8
1,653,273	-				-0.0
1,653,273	-				-1.3
1,653,304	+				+0.4
1,653,304	+				+0.3
1,653,304	+				-0.1
1,653,305	-				+1.6
1,653,305	-				-0.4
1,653,305	-				+0.5
1,653,305	-				+0.3
1,653,305	-				-0.2
1,653,305	-				+0.1
1,653,305	-				-0.3
1,653,305	-				+1.0
1,653,320	+				-1.1
1,653,320	+				-1.0
1,653,482	+		LRK54_RS07645	0.11	+2.1
1,653,482	+		LRK54_RS07645	0.11	-0.2
1,653,482	+		LRK54_RS07645	0.11	+0.1
1,653,482	+		LRK54_RS07645	0.11	+1.1
1,653,482	+		LRK54_RS07645	0.11	-1.6
1,653,482	+		LRK54_RS07645	0.11	-0.3
1,653,483	-		LRK54_RS07645	0.11	-0.5
1,653,483	-		LRK54_RS07645	0.11	-0.1
1,653,483	-		LRK54_RS07645	0.11	-2.7
1,653,483	-		LRK54_RS07645	0.11	-1.0
1,653,483	-		LRK54_RS07645	0.11	-0.1
1,653,483	-		LRK54_RS07645	0.11	+0.6
1,653,483	-		LRK54_RS07645	0.11	-0.1
1,653,704	+		LRK54_RS07645	0.36	+0.3
1,653,704	+		LRK54_RS07645	0.36	+0.8
1,653,956	+		LRK54_RS07645	0.65	+0.3
1,653,956	+		LRK54_RS07645	0.65	-0.6
1,653,956	+		LRK54_RS07645	0.65	+0.4
1,653,956	+		LRK54_RS07645	0.65	-0.5
1,653,956	+		LRK54_RS07645	0.65	-0.8
1,653,957	-		LRK54_RS07645	0.65	+0.4
1,653,957	-		LRK54_RS07645	0.65	-0.8
1,653,957	-		LRK54_RS07645	0.65	-0.1
1,653,957	-		LRK54_RS07645	0.65	+0.1
1,653,957	-		LRK54_RS07645	0.65	-0.1
1,653,965	+		LRK54_RS07645	0.66	+0.9
1,653,966	-		LRK54_RS07645	0.66	-0.4
1,653,966	-		LRK54_RS07645	0.66	-0.1
1,653,966	-		LRK54_RS07645	0.66	-0.2
1,653,966	-		LRK54_RS07645	0.66	+0.2
1,654,104	-		LRK54_RS07645	0.82	-0.8
1,654,411	+				+0.5
1,654,411	+				-0.9
1,654,411	+				+1.7
1,654,411	+				+0.7
1,654,411	+				-0.4
1,654,411	+				+0.4
1,654,411	+				-0.1
1,654,411	+				-1.5
1,654,411	+				-0.4
1,654,411	+				-0.7
1,654,411	+				-0.7
1,654,411	+				-0.1
1,654,411	+				-1.7
1,654,412	-				+0.7
1,654,412	-				-0.5
1,654,412	-				+0.0
1,654,412	-				-0.1
1,654,412	-				-0.7
1,654,412	-				-0.7
1,654,423	+				-0.7
1,654,423	+				-0.4
1,654,423	+				+0.3
1,654,423	+				+0.7
1,654,423	+				-0.1
1,654,423	+				-0.7
1,654,423	+				-0.0
1,654,423	+				-1.7
1,654,423	+				+0.1
1,654,423	+				+0.3
1,654,423	+				+1.4
1,654,423	+				+0.2
1,654,423	+				+1.1
1,654,423	+				-1.0
1,654,423	+				-1.4
1,654,423	+				+0.4
1,654,424	-				-2.1
1,654,424	-				+0.7
1,654,424	-				+0.1
1,654,424	-				+0.2
1,654,424	-				-0.9
1,654,424	-				+0.5
1,654,424	-				-0.1
1,654,424	-				+0.1
1,654,424	-				-0.7
1,654,424	-				+0.9
1,654,424	-				+0.0
1,654,424	-				-0.6
1,654,424	-				+0.0
1,654,424	-				-1.1
1,654,424	-				+0.0
1,654,424	-				-1.0
1,654,424	-				-0.8
1,654,424	-				-0.5
1,654,507	+				+0.3
1,654,507	+				-1.0
1,654,507	+				+1.5
1,654,507	+				+0.2
1,654,507	+				+0.5
1,654,507	+				+0.4
1,654,507	+				+0.4
1,654,507	+				+0.4
1,654,507	+				+0.0
1,654,507	+				-2.1
1,654,507	+				+0.8
1,654,507	+				+0.3
1,654,507	+				+0.1
1,654,507	+				+1.4
1,654,507	+				-0.4
1,654,508	-				+0.6
1,654,508	-				+0.5
1,654,508	-				-1.5
1,654,508	-				-1.3
1,654,508	-				-0.5
1,654,508	-				-0.9
1,654,508	-				+1.2
1,654,508	-				+2.1
1,654,508	-				+1.1
1,654,508	-				+0.2
1,654,508	-				+0.3
1,654,508	-				-0.2
1,654,508	-				+0.7
1,654,513	+				+0.9
1,654,513	+				-0.1
1,654,513	+				-1.3
1,654,513	+				+0.8
1,654,513	+				+0.9
1,654,513	+				+0.1
1,654,514	-				+0.6
1,654,514	-				-1.0
1,654,514	-				-0.1
1,654,582	+		LRK54_RS07650	0.13	+0.8
1,654,582	+		LRK54_RS07650	0.13	+0.2
1,654,582	+		LRK54_RS07650	0.13	+0.0
1,654,582	+		LRK54_RS07650	0.13	+1.1
1,654,582	+		LRK54_RS07650	0.13	-1.5
1,654,583	-		LRK54_RS07650	0.13	-1.9
1,654,583	-		LRK54_RS07650	0.13	-1.7
1,654,583	-		LRK54_RS07650	0.13	-1.5
1,654,583	-		LRK54_RS07650	0.13	+0.1
1,654,583	-		LRK54_RS07650	0.13	-0.6
1,654,738	+		LRK54_RS07650	0.21	+0.9
1,654,738	+		LRK54_RS07650	0.21	-1.2
1,654,765	+		LRK54_RS07650	0.22	+0.6
1,654,765	+		LRK54_RS07650	0.22	-0.0
1,654,765	+		LRK54_RS07650	0.22	-0.5
1,654,765	+		LRK54_RS07650	0.22	-0.4
1,654,765	+		LRK54_RS07650	0.22	-0.0
1,654,765	+		LRK54_RS07650	0.22	+0.2
1,654,765	+		LRK54_RS07650	0.22	-1.2
1,654,765	+		LRK54_RS07650	0.22	-2.0
1,654,765	+		LRK54_RS07650	0.22	+0.9
1,654,765	+		LRK54_RS07650	0.22	+0.2
1,654,765	+		LRK54_RS07650	0.22	-1.6
1,654,765	+		LRK54_RS07650	0.22	-1.5
1,654,765	+		LRK54_RS07650	0.22	+0.3
1,654,765	+		LRK54_RS07650	0.22	+0.1
1,654,765	+		LRK54_RS07650	0.22	+0.3
1,654,765	+		LRK54_RS07650	0.22	-0.5
1,654,765	+		LRK54_RS07650	0.22	-0.8
1,654,765	+		LRK54_RS07650	0.22	-0.0
1,654,765	+		LRK54_RS07650	0.22	-2.3
1,654,766	-		LRK54_RS07650	0.22	-1.4
1,654,766	-		LRK54_RS07650	0.22	+0.9
1,654,766	-		LRK54_RS07650	0.22	-0.9
1,654,766	-		LRK54_RS07650	0.22	+0.1
1,654,766	-		LRK54_RS07650	0.22	-1.1
1,654,766	-		LRK54_RS07650	0.22	-0.1
1,654,766	-		LRK54_RS07650	0.22	-0.2
1,654,766	-		LRK54_RS07650	0.22	-0.5
1,654,766	-		LRK54_RS07650	0.22	-0.4
1,654,766	-		LRK54_RS07650	0.22	+0.9
1,654,766	-		LRK54_RS07650	0.22	+0.1
1,654,766	-		LRK54_RS07650	0.22	-0.7
1,654,766	-		LRK54_RS07650	0.22	+0.2
1,654,766	-		LRK54_RS07650	0.22	-0.9
1,654,766	-		LRK54_RS07650	0.22	-1.8
1,654,766	-		LRK54_RS07650	0.22	+0.3
1,654,783	+		LRK54_RS07650	0.23	-0.1
1,654,783	+		LRK54_RS07650	0.23	-1.1
1,654,783	+		LRK54_RS07650	0.23	+0.1
1,654,783	+		LRK54_RS07650	0.23	-0.8
1,654,783	+		LRK54_RS07650	0.23	-0.3
1,654,783	+		LRK54_RS07650	0.23	-0.1
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1,654,873	+		LRK54_RS07650	0.27	-0.8
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1,654,873	+		LRK54_RS07650	0.27	+0.1
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1,655,179	+		LRK54_RS07650	0.43	-0.1
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