Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16350

Experiment: CDM1 without Cysteine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Cysteine
1,418,813	-		BBR_RS16345	0.25	+0.5
1,418,820	+		BBR_RS16345	0.25	-1.0
1,418,846	+		BBR_RS16345	0.27	-0.6
1,418,846	+		BBR_RS16345	0.27	-1.2
1,418,846	+		BBR_RS16345	0.27	-0.2
1,418,846	+		BBR_RS16345	0.27	+0.2
1,418,854	-		BBR_RS16345	0.28	-0.3
1,418,854	-		BBR_RS16345	0.28	-1.3
1,418,854	-		BBR_RS16345	0.28	-0.4
1,418,892	+		BBR_RS16345	0.31	-0.5
1,418,900	-		BBR_RS16345	0.31	+0.1
1,418,902	+		BBR_RS16345	0.31	-1.6
1,418,902	+		BBR_RS16345	0.31	+0.5
1,418,902	+		BBR_RS16345	0.31	+0.3
1,418,905	-		BBR_RS16345	0.32	+0.9
1,418,905	-		BBR_RS16345	0.32	+0.6
1,418,910	-		BBR_RS16345	0.32	-0.4
1,418,925	+		BBR_RS16345	0.33	-0.5
1,418,927	+		BBR_RS16345	0.33	+0.8
1,418,927	+		BBR_RS16345	0.33	+0.2
1,418,927	+		BBR_RS16345	0.33	-1.1
1,418,927	+		BBR_RS16345	0.33	-0.3
1,418,927	+		BBR_RS16345	0.33	-0.3
1,418,927	+		BBR_RS16345	0.33	+1.2
1,418,927	+		BBR_RS16345	0.33	-1.2
1,418,935	-		BBR_RS16345	0.34	+1.1
1,418,935	-		BBR_RS16345	0.34	+0.7
1,419,017	+		BBR_RS16345	0.40	-0.1
1,419,055	+		BBR_RS16345	0.43	-0.0
1,419,055	+		BBR_RS16345	0.43	-0.2
1,419,086	+		BBR_RS16345	0.46	+0.5
1,419,112	+		BBR_RS16345	0.48	+0.8
1,419,112	+		BBR_RS16345	0.48	+1.2
1,419,120	-		BBR_RS16345	0.48	+0.2
1,419,120	-		BBR_RS16345	0.48	+1.3
1,419,122	+		BBR_RS16345	0.49	+0.8
1,419,130	+		BBR_RS16345	0.49	+0.5
1,419,130	-		BBR_RS16345	0.49	+0.4
1,419,139	+		BBR_RS16345	0.50	+1.1
1,419,139	+		BBR_RS16345	0.50	-0.1
1,419,144	+		BBR_RS16345	0.50	-0.7
1,419,147	-		BBR_RS16345	0.50	-0.0
1,419,147	-		BBR_RS16345	0.50	-1.0
1,419,147	-		BBR_RS16345	0.50	-0.4
1,419,152	-		BBR_RS16345	0.51	+1.0
1,419,154	+		BBR_RS16345	0.51	-0.6
1,419,166	+		BBR_RS16345	0.52	-0.4
1,419,316	+		BBR_RS16345	0.64	+0.8
1,419,324	-		BBR_RS16345	0.64	-0.3
1,419,333	+		BBR_RS16345	0.65	+0.0
1,419,341	-		BBR_RS16345	0.66	+1.7
1,419,349	+		BBR_RS16345	0.66	-0.3
1,419,404	-		BBR_RS16345	0.70	+1.0
1,419,404	-		BBR_RS16345	0.70	+0.2
1,419,439	+		BBR_RS16345	0.73	+0.3
1,419,447	-		BBR_RS16345	0.74	-0.2
1,419,447	-		BBR_RS16345	0.74	+0.5
1,419,479	-		BBR_RS16345	0.76	+2.4
1,419,485	-		BBR_RS16345	0.77	+0.8
1,419,554	-		BBR_RS16345	0.82	+0.8
1,419,638	+		BBR_RS16345	0.89	-1.0
1,419,684	-				-0.5
1,419,716	-				+0.5
1,419,739	+				+0.4
1,419,739	+				-0.6
1,419,747	-				-0.3
1,419,747	-				-0.3
1,419,762	-				+1.2
1,419,792	+				-0.8
1,419,882	+				+0.4
1,419,931	-		BBR_RS16350	0.15	-0.9
1,419,951	+		BBR_RS16350	0.18	+0.8
1,419,959	-		BBR_RS16350	0.19	-1.8
1,419,997	+		BBR_RS16350	0.23	+0.7
1,419,997	+		BBR_RS16350	0.23	-0.9
1,420,044	-		BBR_RS16350	0.29	+1.1
1,420,052	+		BBR_RS16350	0.29	+1.8
1,420,060	-		BBR_RS16350	0.30	+0.8
1,420,060	-		BBR_RS16350	0.30	-1.0
1,420,067	+		BBR_RS16350	0.31	-1.0
1,420,076	+		BBR_RS16350	0.32	-3.2
1,420,126	-		BBR_RS16350	0.38	-2.5
1,420,150	-		BBR_RS16350	0.41	+0.7
1,420,173	+		BBR_RS16350	0.44	+1.2
1,420,186	-		BBR_RS16350	0.45	-1.0
1,420,186	-		BBR_RS16350	0.45	-1.4
1,420,192	+		BBR_RS16350	0.46	-0.8
1,420,197	+		BBR_RS16350	0.46	-0.6
1,420,197	+		BBR_RS16350	0.46	-1.8
1,420,197	+		BBR_RS16350	0.46	-0.7
1,420,200	-		BBR_RS16350	0.47	+0.1
1,420,200	-		BBR_RS16350	0.47	+0.2
1,420,224	+		BBR_RS16350	0.50	-0.9
1,420,302	-		BBR_RS16350	0.59	+0.4
1,420,302	-		BBR_RS16350	0.59	-1.3
1,420,319	-		BBR_RS16350	0.61	-2.1
1,420,423	-		BBR_RS16350	0.73	-0.8
1,420,456	+		BBR_RS16350	0.77	-1.6
1,420,464	-		BBR_RS16350	0.78	-0.4
1,420,464	-		BBR_RS16350	0.78	+0.8
1,420,504	-		BBR_RS16350	0.82	+0.2
1,420,504	-		BBR_RS16350	0.82	-1.0
1,420,527	+		BBR_RS16350	0.85	-0.7
1,420,543	+		BBR_RS16350	0.87	-0.8
1,420,556	+		BBR_RS16350	0.88	-1.6
1,420,606	-				+1.7
1,420,657	-				+0.6
1,420,712	-				+1.9
1,420,736	-				+0.8
1,420,736	-				-1.6
1,420,758	-		BBR_RS16355	0.11	-0.0
1,420,785	-		BBR_RS16355	0.14	-1.2
1,420,800	-		BBR_RS16355	0.15	+0.3
1,420,828	+		BBR_RS16355	0.18	+0.5
1,420,836	-		BBR_RS16355	0.19	+0.3
1,420,836	-		BBR_RS16355	0.19	+0.8
1,420,848	-		BBR_RS16355	0.20	-0.7
1,420,848	-		BBR_RS16355	0.20	-0.6
1,420,876	+		BBR_RS16355	0.23	+0.2
1,420,984	+		BBR_RS16355	0.35	+0.7
1,421,021	+		BBR_RS16355	0.39	-0.5
1,421,031	+		BBR_RS16355	0.40	+0.2
1,421,039	-		BBR_RS16355	0.41	+0.4
1,421,039	-		BBR_RS16355	0.41	-0.0
1,421,055	+		BBR_RS16355	0.42	+0.2
1,421,125	+		BBR_RS16355	0.50	+0.0
1,421,125	+		BBR_RS16355	0.50	-2.0
1,421,126	+		BBR_RS16355	0.50	+0.3
1,421,137	+		BBR_RS16355	0.51	+0.6
1,421,165	+		BBR_RS16355	0.54	-0.8
1,421,165	+		BBR_RS16355	0.54	-1.0
1,421,214	+		BBR_RS16355	0.59	+0.5
1,421,220	-		BBR_RS16355	0.60	+0.2
1,421,222	-		BBR_RS16355	0.60	+0.0
1,421,222	-		BBR_RS16355	0.60	+0.0
1,421,222	-		BBR_RS16355	0.60	-0.4
1,421,235	+		BBR_RS16355	0.62	+0.4
1,421,261	+		BBR_RS16355	0.64	+0.4
1,421,271	+		BBR_RS16355	0.65	+1.1
1,421,285	+		BBR_RS16355	0.67	-1.1
1,421,303	-		BBR_RS16355	0.69	-0.7
1,421,305	+		BBR_RS16355	0.69	+0.9
1,421,314	+		BBR_RS16355	0.70	-0.7
1,421,336	-		BBR_RS16355	0.72	+0.3
1,421,401	+		BBR_RS16355	0.79	-0.1
1,421,409	-		BBR_RS16355	0.80	-1.0
1,421,411	+		BBR_RS16355	0.80	-0.9
1,421,419	-		BBR_RS16355	0.81	+1.1
1,421,419	-		BBR_RS16355	0.81	+0.9
1,421,432	+		BBR_RS16355	0.83	+0.0
1,421,475	-		BBR_RS16355	0.87	+0.7
1,421,475	-		BBR_RS16355	0.87	-0.5
1,421,526	+				-0.1
1,421,561	-				-0.0
1,421,561	-				+2.4
1,421,605	+				-2.6
1,421,605	+				-2.2
1,421,615	+				+0.6
1,421,615	+				-0.8
1,421,615	+				-0.4
1,421,617	+				+1.4