Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4122

Experiment: D-Mannose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_4121 and Ac3H11_4122 are separated by 191 nucleotidesAc3H11_4122 and Ac3H11_4123 are separated by 40 nucleotidesAc3H11_4123 and Ac3H11_4124 are separated by 85 nucleotides Ac3H11_4121 - Fe-S OXIDOREDUCTASE (1.8.-.-), at 375,766 to 378,267 _4121 Ac3H11_4122 - Histone acetyltransferase HPA2 and related acetyltransferases, at 378,459 to 379,427 _4122 Ac3H11_4123 - Histone acetyltransferase HPA2 and related acetyltransferases, at 379,468 to 380,016 _4123 Ac3H11_4124 - hypothetical protein, at 380,102 to 380,293 _4124 Position (kb) 378 379 380Strain fitness (log2 ratio) -2 -1 0 1 2at 377.483 kb on + strand, within Ac3H11_4121at 377.483 kb on + strand, within Ac3H11_4121at 377.483 kb on + strand, within Ac3H11_4121at 377.484 kb on - strand, within Ac3H11_4121at 377.484 kb on - strand, within Ac3H11_4121at 377.484 kb on - strand, within Ac3H11_4121at 377.484 kb on - strand, within Ac3H11_4121at 377.484 kb on - strand, within Ac3H11_4121at 377.484 kb on - strand, within Ac3H11_4121at 377.675 kb on + strand, within Ac3H11_4121at 377.675 kb on + strand, within Ac3H11_4121at 377.676 kb on - strand, within Ac3H11_4121at 377.735 kb on + strand, within Ac3H11_4121at 377.741 kb on + strand, within Ac3H11_4121at 377.741 kb on + strand, within Ac3H11_4121at 377.741 kb on + strand, within Ac3H11_4121at 377.742 kb on - strand, within Ac3H11_4121at 377.742 kb on - strand, within Ac3H11_4121at 377.742 kb on - strand, within Ac3H11_4121at 377.742 kb on - strand, within Ac3H11_4121at 377.742 kb on - strand, within Ac3H11_4121at 377.801 kb on + strand, within Ac3H11_4121at 377.801 kb on + strand, within Ac3H11_4121at 377.802 kb on - strand, within Ac3H11_4121at 377.802 kb on - strand, within Ac3H11_4121at 377.802 kb on - strand, within Ac3H11_4121at 377.802 kb on - strand, within Ac3H11_4121at 377.825 kb on + strand, within Ac3H11_4121at 377.826 kb on - strand, within Ac3H11_4121at 377.876 kb on + strand, within Ac3H11_4121at 377.876 kb on + strand, within Ac3H11_4121at 377.876 kb on + strand, within Ac3H11_4121at 377.877 kb on - strand, within Ac3H11_4121at 377.877 kb on - strand, within Ac3H11_4121at 377.877 kb on - strand, within Ac3H11_4121at 377.877 kb on - strand, within Ac3H11_4121at 377.877 kb on - strand, within Ac3H11_4121at 377.877 kb on - strand, within Ac3H11_4121at 377.912 kb on + strand, within Ac3H11_4121at 378.092 kb on + strandat 378.092 kb on + strandat 378.092 kb on + strandat 378.092 kb on + strandat 378.092 kb on + strandat 378.092 kb on + strandat 378.092 kb on + strandat 378.092 kb on + strandat 378.092 kb on + strandat 378.092 kb on + strandat 378.092 kb on + strandat 378.092 kb on + strandat 378.092 kb on + strandat 378.093 kb on - strandat 378.093 kb on - strandat 378.093 kb on - strandat 378.093 kb on - strandat 378.093 kb on - strandat 378.093 kb on - strandat 378.093 kb on - strandat 378.093 kb on - strandat 378.093 kb on - strandat 378.093 kb on - strandat 378.093 kb on - strandat 378.093 kb on - strandat 378.200 kb on + strandat 378.200 kb on + strandat 378.209 kb on + strandat 378.210 kb on - strandat 378.331 kb on + strandat 378.331 kb on + strandat 378.332 kb on - strandat 378.344 kb on + strandat 378.345 kb on - strandat 378.345 kb on - strandat 378.418 kb on + strandat 378.419 kb on - strandat 378.420 kb on + strandat 378.437 kb on + strandat 378.437 kb on + strandat 378.437 kb on + strandat 378.442 kb on - strandat 378.458 kb on + strandat 378.458 kb on + strandat 378.459 kb on - strandat 378.459 kb on - strandat 378.579 kb on + strand, within Ac3H11_4122at 378.579 kb on + strand, within Ac3H11_4122at 378.580 kb on - strand, within Ac3H11_4122at 378.690 kb on + strand, within Ac3H11_4122at 378.691 kb on - strand, within Ac3H11_4122at 378.691 kb on - strand, within Ac3H11_4122at 379.029 kb on + strand, within Ac3H11_4122at 379.029 kb on + strand, within Ac3H11_4122at 379.281 kb on + strand, within Ac3H11_4122at 379.282 kb on - strand, within Ac3H11_4122at 379.282 kb on - strand, within Ac3H11_4122at 379.282 kb on - strand, within Ac3H11_4122at 379.282 kb on - strand, within Ac3H11_4122at 379.282 kb on - strand, within Ac3H11_4122at 379.335 kb on + strandat 379.335 kb on + strandat 379.335 kb on + strandat 379.335 kb on + strandat 379.335 kb on + strandat 379.335 kb on + strandat 379.336 kb on - strandat 379.336 kb on - strandat 379.336 kb on - strandat 379.336 kb on - strandat 379.336 kb on - strandat 379.336 kb on - strandat 379.336 kb on - strandat 379.336 kb on - strandat 379.374 kb on + strandat 379.375 kb on - strandat 379.375 kb on - strandat 379.375 kb on - strandat 379.375 kb on - strandat 379.425 kb on + strandat 379.666 kb on + strand, within Ac3H11_4123at 379.666 kb on + strand, within Ac3H11_4123at 379.666 kb on + strand, within Ac3H11_4123at 379.666 kb on + strand, within Ac3H11_4123at 379.666 kb on + strand, within Ac3H11_4123at 379.667 kb on - strand, within Ac3H11_4123at 379.667 kb on - strand, within Ac3H11_4123at 379.667 kb on - strand, within Ac3H11_4123at 379.667 kb on - strand, within Ac3H11_4123at 379.667 kb on - strand, within Ac3H11_4123at 379.787 kb on - strand, within Ac3H11_4123at 379.787 kb on - strand, within Ac3H11_4123at 379.787 kb on - strand, within Ac3H11_4123at 379.891 kb on + strand, within Ac3H11_4123at 379.891 kb on + strand, within Ac3H11_4123at 379.891 kb on + strand, within Ac3H11_4123at 379.891 kb on + strand, within Ac3H11_4123at 379.891 kb on + strand, within Ac3H11_4123at 379.891 kb on + strand, within Ac3H11_4123at 379.891 kb on + strand, within Ac3H11_4123at 379.891 kb on + strand, within Ac3H11_4123at 379.891 kb on + strand, within Ac3H11_4123at 379.891 kb on + strand, within Ac3H11_4123at 379.891 kb on + strand, within Ac3H11_4123at 379.892 kb on - strand, within Ac3H11_4123at 379.892 kb on - strand, within Ac3H11_4123at 379.892 kb on - strand, within Ac3H11_4123at 379.892 kb on - strand, within Ac3H11_4123at 379.892 kb on - strand, within Ac3H11_4123at 379.892 kb on - strand, within Ac3H11_4123at 379.892 kb on - strand, within Ac3H11_4123at 379.892 kb on - strand, within Ac3H11_4123at 379.906 kb on + strand, within Ac3H11_4123at 379.948 kb on + strand, within Ac3H11_4123at 379.948 kb on + strand, within Ac3H11_4123at 379.948 kb on + strand, within Ac3H11_4123at 379.948 kb on + strand, within Ac3H11_4123at 379.948 kb on + strand, within Ac3H11_4123at 379.949 kb on - strand, within Ac3H11_4123at 379.949 kb on - strand, within Ac3H11_4123at 379.949 kb on - strand, within Ac3H11_4123at 379.949 kb on - strand, within Ac3H11_4123at 380.348 kb on + strandat 380.348 kb on + strandat 380.374 kb on + strandat 380.374 kb on + strandat 380.374 kb on + strandat 380.374 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
remove
377,483 + Ac3H11_4121 0.69 +1.3
377,483 + Ac3H11_4121 0.69 +0.6
377,483 + Ac3H11_4121 0.69 +0.3
377,484 - Ac3H11_4121 0.69 +0.2
377,484 - Ac3H11_4121 0.69 -0.1
377,484 - Ac3H11_4121 0.69 -0.8
377,484 - Ac3H11_4121 0.69 -0.1
377,484 - Ac3H11_4121 0.69 -1.0
377,484 - Ac3H11_4121 0.69 +0.7
377,675 + Ac3H11_4121 0.76 +0.4
377,675 + Ac3H11_4121 0.76 +0.1
377,676 - Ac3H11_4121 0.76 +0.8
377,735 + Ac3H11_4121 0.79 +0.2
377,741 + Ac3H11_4121 0.79 -1.2
377,741 + Ac3H11_4121 0.79 +0.6
377,741 + Ac3H11_4121 0.79 +0.1
377,742 - Ac3H11_4121 0.79 +0.0
377,742 - Ac3H11_4121 0.79 +0.4
377,742 - Ac3H11_4121 0.79 +0.2
377,742 - Ac3H11_4121 0.79 +1.2
377,742 - Ac3H11_4121 0.79 +0.5
377,801 + Ac3H11_4121 0.81 +1.2
377,801 + Ac3H11_4121 0.81 +0.1
377,802 - Ac3H11_4121 0.81 +0.9
377,802 - Ac3H11_4121 0.81 -1.1
377,802 - Ac3H11_4121 0.81 +0.1
377,802 - Ac3H11_4121 0.81 +0.2
377,825 + Ac3H11_4121 0.82 -0.1
377,826 - Ac3H11_4121 0.82 +0.3
377,876 + Ac3H11_4121 0.84 +0.2
377,876 + Ac3H11_4121 0.84 +1.1
377,876 + Ac3H11_4121 0.84 +0.7
377,877 - Ac3H11_4121 0.84 +0.2
377,877 - Ac3H11_4121 0.84 -0.1
377,877 - Ac3H11_4121 0.84 +0.5
377,877 - Ac3H11_4121 0.84 +1.2
377,877 - Ac3H11_4121 0.84 +0.8
377,877 - Ac3H11_4121 0.84 -0.8
377,912 + Ac3H11_4121 0.86 +0.8
378,092 + +0.4
378,092 + +0.0
378,092 + -1.9
378,092 + +0.6
378,092 + +0.1
378,092 + +0.5
378,092 + +0.8
378,092 + +0.0
378,092 + -0.1
378,092 + +0.4
378,092 + +0.5
378,092 + +0.8
378,092 + +0.4
378,093 - +0.7
378,093 - +0.6
378,093 - +0.5
378,093 - +0.1
378,093 - +0.0
378,093 - +0.1
378,093 - +0.9
378,093 - -0.3
378,093 - +0.5
378,093 - -0.3
378,093 - +1.1
378,093 - -0.3
378,200 + -0.5
378,200 + +0.5
378,209 + -0.2
378,210 - +0.5
378,331 + -0.5
378,331 + +0.3
378,332 - +0.5
378,344 + -0.4
378,345 - +0.5
378,345 - +0.7
378,418 + -0.8
378,419 - +0.2
378,420 + +0.5
378,437 + +0.1
378,437 + +0.9
378,437 + -0.4
378,442 - +0.3
378,458 + +0.6
378,458 + +0.3
378,459 - +2.2
378,459 - -0.1
378,579 + Ac3H11_4122 0.12 +0.1
378,579 + Ac3H11_4122 0.12 +0.7
378,580 - Ac3H11_4122 0.12 +0.4
378,690 + Ac3H11_4122 0.24 +0.5
378,691 - Ac3H11_4122 0.24 +0.6
378,691 - Ac3H11_4122 0.24 +0.3
379,029 + Ac3H11_4122 0.59 -0.6
379,029 + Ac3H11_4122 0.59 -0.5
379,281 + Ac3H11_4122 0.85 -0.3
379,282 - Ac3H11_4122 0.85 +0.5
379,282 - Ac3H11_4122 0.85 +0.3
379,282 - Ac3H11_4122 0.85 +2.0
379,282 - Ac3H11_4122 0.85 -0.5
379,282 - Ac3H11_4122 0.85 +0.2
379,335 + +0.9
379,335 + +1.1
379,335 + +0.5
379,335 + +0.9
379,335 + +0.8
379,335 + -0.7
379,336 - -1.2
379,336 - +1.6
379,336 - -0.6
379,336 - +0.6
379,336 - -0.2
379,336 - +0.9
379,336 - -0.2
379,336 - -0.4
379,374 + +0.2
379,375 - +1.1
379,375 - +0.2
379,375 - +0.7
379,375 - -0.3
379,425 + -0.0
379,666 + Ac3H11_4123 0.36 +0.0
379,666 + Ac3H11_4123 0.36 -0.5
379,666 + Ac3H11_4123 0.36 -1.1
379,666 + Ac3H11_4123 0.36 +0.4
379,666 + Ac3H11_4123 0.36 +0.7
379,667 - Ac3H11_4123 0.36 -0.9
379,667 - Ac3H11_4123 0.36 +0.7
379,667 - Ac3H11_4123 0.36 +0.6
379,667 - Ac3H11_4123 0.36 +0.5
379,667 - Ac3H11_4123 0.36 -0.9
379,787 - Ac3H11_4123 0.58 -0.1
379,787 - Ac3H11_4123 0.58 -0.9
379,787 - Ac3H11_4123 0.58 +2.0
379,891 + Ac3H11_4123 0.77 +0.1
379,891 + Ac3H11_4123 0.77 +0.4
379,891 + Ac3H11_4123 0.77 +0.7
379,891 + Ac3H11_4123 0.77 +0.2
379,891 + Ac3H11_4123 0.77 +0.2
379,891 + Ac3H11_4123 0.77 -0.3
379,891 + Ac3H11_4123 0.77 +0.3
379,891 + Ac3H11_4123 0.77 +0.2
379,891 + Ac3H11_4123 0.77 -2.3
379,891 + Ac3H11_4123 0.77 +0.4
379,891 + Ac3H11_4123 0.77 +0.8
379,892 - Ac3H11_4123 0.77 +0.9
379,892 - Ac3H11_4123 0.77 +0.2
379,892 - Ac3H11_4123 0.77 +1.9
379,892 - Ac3H11_4123 0.77 -0.3
379,892 - Ac3H11_4123 0.77 -0.1
379,892 - Ac3H11_4123 0.77 -1.5
379,892 - Ac3H11_4123 0.77 -1.2
379,892 - Ac3H11_4123 0.77 +0.5
379,906 + Ac3H11_4123 0.80 -0.7
379,948 + Ac3H11_4123 0.87 -0.5
379,948 + Ac3H11_4123 0.87 +1.3
379,948 + Ac3H11_4123 0.87 +1.2
379,948 + Ac3H11_4123 0.87 +1.6
379,948 + Ac3H11_4123 0.87 -0.4
379,949 - Ac3H11_4123 0.88 +1.0
379,949 - Ac3H11_4123 0.88 +0.4
379,949 - Ac3H11_4123 0.88 +1.0
379,949 - Ac3H11_4123 0.88 -0.9
380,348 + +0.2
380,348 + +0.5
380,374 + +0.5
380,374 + -0.4
380,374 + -0.3
380,374 + -1.0

Or see this region's nucleotide sequence