Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4061

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4060 and Ac3H11_4061 are separated by 94 nucleotidesAc3H11_4061 and Ac3H11_4062 overlap by 4 nucleotidesAc3H11_4062 and Ac3H11_4063 are separated by 120 nucleotides Ac3H11_4060 - Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30), at 305,025 to 307,217 _4060 Ac3H11_4061 - Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30), at 307,312 to 309,891 _4061 Ac3H11_4062 - Conserved uncharacterized protein CreA, at 309,888 to 310,394 _4062 Ac3H11_4063 - 2-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain, at 310,515 to 311,162 _4063 Position (kb) 307 308 309 310Strain fitness (log2 ratio) -2 -1 0 1at 306.742 kb on - strand, within Ac3H11_4060at 306.742 kb on - strand, within Ac3H11_4060at 306.945 kb on + strand, within Ac3H11_4060at 306.945 kb on + strand, within Ac3H11_4060at 306.945 kb on + strand, within Ac3H11_4060at 306.946 kb on - strand, within Ac3H11_4060at 306.946 kb on - strand, within Ac3H11_4060at 306.946 kb on - strand, within Ac3H11_4060at 306.946 kb on - strand, within Ac3H11_4060at 306.946 kb on - strand, within Ac3H11_4060at 306.946 kb on - strand, within Ac3H11_4060at 306.946 kb on - strand, within Ac3H11_4060at 306.946 kb on - strand, within Ac3H11_4060at 307.227 kb on - strandat 307.227 kb on - strandat 307.296 kb on + strandat 307.297 kb on - strandat 307.297 kb on - strandat 307.315 kb on + strandat 307.319 kb on + strandat 307.319 kb on + strandat 307.319 kb on + strandat 307.319 kb on + strandat 307.320 kb on - strandat 307.320 kb on - strandat 307.320 kb on - strandat 307.603 kb on + strand, within Ac3H11_4061at 307.603 kb on + strand, within Ac3H11_4061at 307.603 kb on + strand, within Ac3H11_4061at 307.604 kb on - strand, within Ac3H11_4061at 307.621 kb on + strand, within Ac3H11_4061at 307.621 kb on + strand, within Ac3H11_4061at 307.622 kb on - strand, within Ac3H11_4061at 307.657 kb on + strand, within Ac3H11_4061at 307.658 kb on - strand, within Ac3H11_4061at 308.116 kb on + strand, within Ac3H11_4061at 308.116 kb on + strand, within Ac3H11_4061at 308.116 kb on + strand, within Ac3H11_4061at 308.117 kb on - strand, within Ac3H11_4061at 308.117 kb on - strand, within Ac3H11_4061at 308.117 kb on - strand, within Ac3H11_4061at 308.647 kb on + strand, within Ac3H11_4061at 308.692 kb on + strand, within Ac3H11_4061at 308.692 kb on + strand, within Ac3H11_4061at 308.692 kb on + strand, within Ac3H11_4061at 308.692 kb on + strand, within Ac3H11_4061at 308.693 kb on - strand, within Ac3H11_4061at 308.693 kb on - strand, within Ac3H11_4061at 308.693 kb on - strand, within Ac3H11_4061at 308.693 kb on - strand, within Ac3H11_4061at 308.693 kb on - strand, within Ac3H11_4061at 308.828 kb on + strand, within Ac3H11_4061at 308.828 kb on + strand, within Ac3H11_4061at 308.829 kb on - strand, within Ac3H11_4061at 308.829 kb on - strand, within Ac3H11_4061at 308.829 kb on - strand, within Ac3H11_4061at 308.830 kb on + strand, within Ac3H11_4061at 308.830 kb on + strand, within Ac3H11_4061at 308.830 kb on + strand, within Ac3H11_4061at 308.830 kb on + strand, within Ac3H11_4061at 308.830 kb on + strand, within Ac3H11_4061at 308.830 kb on + strand, within Ac3H11_4061at 308.830 kb on + strand, within Ac3H11_4061at 308.830 kb on + strand, within Ac3H11_4061at 308.830 kb on + strand, within Ac3H11_4061at 308.830 kb on + strand, within Ac3H11_4061at 308.831 kb on - strand, within Ac3H11_4061at 308.831 kb on - strand, within Ac3H11_4061at 308.831 kb on - strand, within Ac3H11_4061at 308.831 kb on - strand, within Ac3H11_4061at 308.831 kb on - strand, within Ac3H11_4061at 308.831 kb on - strand, within Ac3H11_4061at 308.831 kb on - strand, within Ac3H11_4061at 308.831 kb on - strand, within Ac3H11_4061at 308.831 kb on - strand, within Ac3H11_4061at 309.028 kb on + strand, within Ac3H11_4061at 309.028 kb on + strand, within Ac3H11_4061at 309.028 kb on + strand, within Ac3H11_4061at 309.029 kb on - strand, within Ac3H11_4061at 309.029 kb on - strand, within Ac3H11_4061at 309.029 kb on - strand, within Ac3H11_4061at 309.029 kb on - strand, within Ac3H11_4061at 309.029 kb on - strand, within Ac3H11_4061at 309.029 kb on - strand, within Ac3H11_4061at 309.166 kb on + strand, within Ac3H11_4061at 309.166 kb on + strand, within Ac3H11_4061at 309.166 kb on + strand, within Ac3H11_4061at 309.166 kb on + strand, within Ac3H11_4061at 309.167 kb on - strand, within Ac3H11_4061at 309.167 kb on - strand, within Ac3H11_4061at 309.167 kb on - strand, within Ac3H11_4061at 309.167 kb on - strand, within Ac3H11_4061at 309.167 kb on - strand, within Ac3H11_4061at 309.233 kb on - strand, within Ac3H11_4061at 309.233 kb on - strand, within Ac3H11_4061at 309.233 kb on - strand, within Ac3H11_4061at 309.233 kb on - strand, within Ac3H11_4061at 309.233 kb on - strand, within Ac3H11_4061at 309.490 kb on + strand, within Ac3H11_4061at 309.490 kb on + strand, within Ac3H11_4061at 309.491 kb on - strand, within Ac3H11_4061at 309.652 kb on + strandat 309.653 kb on - strandat 309.653 kb on - strandat 310.050 kb on + strand, within Ac3H11_4062at 310.083 kb on + strand, within Ac3H11_4062at 310.083 kb on + strand, within Ac3H11_4062at 310.083 kb on + strand, within Ac3H11_4062at 310.083 kb on + strand, within Ac3H11_4062at 310.084 kb on - strand, within Ac3H11_4062at 310.084 kb on - strand, within Ac3H11_4062at 310.084 kb on - strand, within Ac3H11_4062at 310.084 kb on - strand, within Ac3H11_4062at 310.084 kb on - strand, within Ac3H11_4062at 310.112 kb on + strand, within Ac3H11_4062at 310.112 kb on + strand, within Ac3H11_4062at 310.112 kb on + strand, within Ac3H11_4062at 310.112 kb on + strand, within Ac3H11_4062at 310.113 kb on - strand, within Ac3H11_4062at 310.305 kb on + strand, within Ac3H11_4062at 310.305 kb on + strand, within Ac3H11_4062at 310.306 kb on - strand, within Ac3H11_4062at 310.392 kb on + strandat 310.393 kb on - strandat 310.393 kb on - strandat 310.393 kb on - strandat 310.453 kb on - strandat 310.492 kb on + strandat 310.499 kb on + strandat 310.508 kb on + strandat 310.510 kb on + strandat 310.636 kb on + strand, within Ac3H11_4063at 310.636 kb on + strand, within Ac3H11_4063at 310.637 kb on - strand, within Ac3H11_4063at 310.777 kb on + strand, within Ac3H11_4063at 310.777 kb on + strand, within Ac3H11_4063at 310.864 kb on + strand, within Ac3H11_4063at 310.864 kb on + strand, within Ac3H11_4063at 310.864 kb on + strand, within Ac3H11_4063at 310.865 kb on - strand, within Ac3H11_4063at 310.865 kb on - strand, within Ac3H11_4063at 310.865 kb on - strand, within Ac3H11_4063at 310.865 kb on - strand, within Ac3H11_4063at 310.865 kb on - strand, within Ac3H11_4063at 310.865 kb on - strand, within Ac3H11_4063at 310.865 kb on - strand, within Ac3H11_4063

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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306,742 - Ac3H11_4060 0.78 -1.0
306,742 - Ac3H11_4060 0.78 -0.5
306,945 + Ac3H11_4060 0.88 -0.9
306,945 + Ac3H11_4060 0.88 -1.5
306,945 + Ac3H11_4060 0.88 -0.6
306,946 - Ac3H11_4060 0.88 -1.8
306,946 - Ac3H11_4060 0.88 -1.5
306,946 - Ac3H11_4060 0.88 -1.4
306,946 - Ac3H11_4060 0.88 -0.9
306,946 - Ac3H11_4060 0.88 -1.5
306,946 - Ac3H11_4060 0.88 -1.3
306,946 - Ac3H11_4060 0.88 -0.8
306,946 - Ac3H11_4060 0.88 +0.1
307,227 - -0.8
307,227 - -0.8
307,296 + -0.4
307,297 - -0.7
307,297 - -1.2
307,315 + -0.8
307,319 + +0.3
307,319 + -1.1
307,319 + -1.7
307,319 + -1.4
307,320 - -1.0
307,320 - -0.9
307,320 - -1.3
307,603 + Ac3H11_4061 0.11 -0.3
307,603 + Ac3H11_4061 0.11 -1.9
307,603 + Ac3H11_4061 0.11 -0.7
307,604 - Ac3H11_4061 0.11 -1.5
307,621 + Ac3H11_4061 0.12 -1.4
307,621 + Ac3H11_4061 0.12 -1.0
307,622 - Ac3H11_4061 0.12 -0.5
307,657 + Ac3H11_4061 0.13 -0.5
307,658 - Ac3H11_4061 0.13 -1.3
308,116 + Ac3H11_4061 0.31 -1.0
308,116 + Ac3H11_4061 0.31 -1.7
308,116 + Ac3H11_4061 0.31 -1.0
308,117 - Ac3H11_4061 0.31 +0.0
308,117 - Ac3H11_4061 0.31 -1.2
308,117 - Ac3H11_4061 0.31 -1.1
308,647 + Ac3H11_4061 0.52 -1.4
308,692 + Ac3H11_4061 0.53 +0.1
308,692 + Ac3H11_4061 0.53 -1.3
308,692 + Ac3H11_4061 0.53 -0.7
308,692 + Ac3H11_4061 0.53 -0.8
308,693 - Ac3H11_4061 0.54 -0.9
308,693 - Ac3H11_4061 0.54 -1.5
308,693 - Ac3H11_4061 0.54 -0.8
308,693 - Ac3H11_4061 0.54 -1.3
308,693 - Ac3H11_4061 0.54 -0.9
308,828 + Ac3H11_4061 0.59 -0.5
308,828 + Ac3H11_4061 0.59 -0.6
308,829 - Ac3H11_4061 0.59 -0.6
308,829 - Ac3H11_4061 0.59 -0.0
308,829 - Ac3H11_4061 0.59 -1.0
308,830 + Ac3H11_4061 0.59 -1.4
308,830 + Ac3H11_4061 0.59 -2.5
308,830 + Ac3H11_4061 0.59 -1.6
308,830 + Ac3H11_4061 0.59 -1.2
308,830 + Ac3H11_4061 0.59 -1.8
308,830 + Ac3H11_4061 0.59 -1.0
308,830 + Ac3H11_4061 0.59 -0.8
308,830 + Ac3H11_4061 0.59 -0.4
308,830 + Ac3H11_4061 0.59 -1.0
308,830 + Ac3H11_4061 0.59 -1.0
308,831 - Ac3H11_4061 0.59 -1.4
308,831 - Ac3H11_4061 0.59 -1.0
308,831 - Ac3H11_4061 0.59 -0.7
308,831 - Ac3H11_4061 0.59 -1.2
308,831 - Ac3H11_4061 0.59 -2.1
308,831 - Ac3H11_4061 0.59 -1.3
308,831 - Ac3H11_4061 0.59 -0.9
308,831 - Ac3H11_4061 0.59 -0.9
308,831 - Ac3H11_4061 0.59 -1.1
309,028 + Ac3H11_4061 0.67 -0.9
309,028 + Ac3H11_4061 0.67 -1.4
309,028 + Ac3H11_4061 0.67 -1.1
309,029 - Ac3H11_4061 0.67 -0.5
309,029 - Ac3H11_4061 0.67 -0.5
309,029 - Ac3H11_4061 0.67 -1.6
309,029 - Ac3H11_4061 0.67 -1.2
309,029 - Ac3H11_4061 0.67 -0.7
309,029 - Ac3H11_4061 0.67 -1.6
309,166 + Ac3H11_4061 0.72 -1.1
309,166 + Ac3H11_4061 0.72 -0.6
309,166 + Ac3H11_4061 0.72 -0.5
309,166 + Ac3H11_4061 0.72 -0.3
309,167 - Ac3H11_4061 0.72 -0.7
309,167 - Ac3H11_4061 0.72 -2.4
309,167 - Ac3H11_4061 0.72 -1.1
309,167 - Ac3H11_4061 0.72 -0.3
309,167 - Ac3H11_4061 0.72 -1.1
309,233 - Ac3H11_4061 0.74 -0.8
309,233 - Ac3H11_4061 0.74 -0.3
309,233 - Ac3H11_4061 0.74 -0.4
309,233 - Ac3H11_4061 0.74 -1.0
309,233 - Ac3H11_4061 0.74 -1.5
309,490 + Ac3H11_4061 0.84 -1.6
309,490 + Ac3H11_4061 0.84 -0.9
309,491 - Ac3H11_4061 0.84 -0.3
309,652 + +0.0
309,653 - -2.3
309,653 - -0.8
310,050 + Ac3H11_4062 0.32 -0.2
310,083 + Ac3H11_4062 0.38 -1.0
310,083 + Ac3H11_4062 0.38 -0.4
310,083 + Ac3H11_4062 0.38 +0.3
310,083 + Ac3H11_4062 0.38 -0.0
310,084 - Ac3H11_4062 0.39 +0.2
310,084 - Ac3H11_4062 0.39 -0.3
310,084 - Ac3H11_4062 0.39 +0.3
310,084 - Ac3H11_4062 0.39 -0.7
310,084 - Ac3H11_4062 0.39 +0.3
310,112 + Ac3H11_4062 0.44 +0.1
310,112 + Ac3H11_4062 0.44 -0.0
310,112 + Ac3H11_4062 0.44 +0.7
310,112 + Ac3H11_4062 0.44 -0.5
310,113 - Ac3H11_4062 0.44 +0.2
310,305 + Ac3H11_4062 0.82 -0.0
310,305 + Ac3H11_4062 0.82 -1.3
310,306 - Ac3H11_4062 0.82 -0.6
310,392 + +0.6
310,393 - -0.5
310,393 - -0.2
310,393 - -0.6
310,453 - -0.0
310,492 + -0.5
310,499 + -0.8
310,508 + -1.5
310,510 + +0.5
310,636 + Ac3H11_4063 0.19 -0.2
310,636 + Ac3H11_4063 0.19 -0.2
310,637 - Ac3H11_4063 0.19 +1.3
310,777 + Ac3H11_4063 0.40 -0.2
310,777 + Ac3H11_4063 0.40 +1.4
310,864 + Ac3H11_4063 0.54 +0.3
310,864 + Ac3H11_4063 0.54 -1.1
310,864 + Ac3H11_4063 0.54 -0.4
310,865 - Ac3H11_4063 0.54 -2.5
310,865 - Ac3H11_4063 0.54 -1.4
310,865 - Ac3H11_4063 0.54 -0.3
310,865 - Ac3H11_4063 0.54 -0.3
310,865 - Ac3H11_4063 0.54 +0.4
310,865 - Ac3H11_4063 0.54 +0.4
310,865 - Ac3H11_4063 0.54 -0.3

Or see this region's nucleotide sequence