Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2190 and Ac3H11_2191 are separated by 136 nucleotides Ac3H11_2191 and Ac3H11_2192 are separated by 27 nucleotides
Ac3H11_2190 - Permease of the drug/metabolite transporter (DMT) superfamily, at 420,573 to 421,487
_2190
Ac3H11_2191 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 421,624 to 422,067
_2191
Ac3H11_2192 - FIG000557: hypothetical protein co-occurring with RecR, at 422,095 to 422,943
_2192
Position (kb) 421
422
423 Strain fitness (log2 ratio) -1
0
1
2 at 420.752 kb on - strand, within Ac3H11_2190 at 420.752 kb on - strand, within Ac3H11_2190 at 420.778 kb on + strand, within Ac3H11_2190 at 420.778 kb on + strand, within Ac3H11_2190 at 420.778 kb on + strand, within Ac3H11_2190 at 420.778 kb on + strand, within Ac3H11_2190 at 420.778 kb on + strand, within Ac3H11_2190 at 420.779 kb on - strand, within Ac3H11_2190 at 420.779 kb on - strand, within Ac3H11_2190 at 420.779 kb on - strand, within Ac3H11_2190 at 420.779 kb on - strand, within Ac3H11_2190 at 420.779 kb on - strand, within Ac3H11_2190 at 420.779 kb on - strand, within Ac3H11_2190 at 420.779 kb on - strand, within Ac3H11_2190 at 420.779 kb on - strand, within Ac3H11_2190 at 420.806 kb on - strand, within Ac3H11_2190 at 420.806 kb on - strand, within Ac3H11_2190 at 420.806 kb on - strand, within Ac3H11_2190 at 420.806 kb on - strand, within Ac3H11_2190 at 420.817 kb on + strand, within Ac3H11_2190 at 420.817 kb on + strand, within Ac3H11_2190 at 420.817 kb on + strand, within Ac3H11_2190 at 420.817 kb on + strand, within Ac3H11_2190 at 420.817 kb on + strand, within Ac3H11_2190 at 420.818 kb on - strand, within Ac3H11_2190 at 420.818 kb on - strand, within Ac3H11_2190 at 420.818 kb on - strand, within Ac3H11_2190 at 420.818 kb on - strand, within Ac3H11_2190 at 420.818 kb on - strand, within Ac3H11_2190 at 420.818 kb on - strand, within Ac3H11_2190 at 420.818 kb on - strand, within Ac3H11_2190 at 420.818 kb on - strand, within Ac3H11_2190 at 420.818 kb on - strand, within Ac3H11_2190 at 420.818 kb on - strand, within Ac3H11_2190 at 420.818 kb on - strand, within Ac3H11_2190 at 420.818 kb on - strand, within Ac3H11_2190 at 421.042 kb on + strand, within Ac3H11_2190 at 421.043 kb on - strand, within Ac3H11_2190 at 421.195 kb on + strand, within Ac3H11_2190 at 421.196 kb on - strand, within Ac3H11_2190 at 421.196 kb on - strand, within Ac3H11_2190 at 421.196 kb on - strand, within Ac3H11_2190 at 421.231 kb on + strand, within Ac3H11_2190 at 421.232 kb on - strand, within Ac3H11_2190 at 421.232 kb on - strand, within Ac3H11_2190 at 421.437 kb on + strand at 421.438 kb on - strand at 421.487 kb on + strand at 421.487 kb on + strand at 421.488 kb on - strand at 421.488 kb on - strand at 421.488 kb on - strand at 421.526 kb on + strand at 421.527 kb on - strand at 421.527 kb on - strand at 421.527 kb on - strand at 421.528 kb on + strand at 421.561 kb on - strand at 421.561 kb on - strand at 421.563 kb on + strand at 421.563 kb on + strand at 421.778 kb on + strand, within Ac3H11_2191 at 421.804 kb on + strand, within Ac3H11_2191 at 422.558 kb on + strand, within Ac3H11_2192 at 422.559 kb on - strand, within Ac3H11_2192 at 422.559 kb on - strand, within Ac3H11_2192 at 422.559 kb on - strand, within Ac3H11_2192 at 422.600 kb on + strand, within Ac3H11_2192 at 422.600 kb on + strand, within Ac3H11_2192 at 422.600 kb on + strand, within Ac3H11_2192 at 422.601 kb on - strand, within Ac3H11_2192 at 422.601 kb on - strand, within Ac3H11_2192 at 422.601 kb on - strand, within Ac3H11_2192 at 422.601 kb on - strand, within Ac3H11_2192 at 422.732 kb on + strand, within Ac3H11_2192 at 422.733 kb on - strand, within Ac3H11_2192 at 422.819 kb on + strand, within Ac3H11_2192
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 420,752 - Ac3H11_2190 0.20 -0.0 420,752 - Ac3H11_2190 0.20 +0.0 420,778 + Ac3H11_2190 0.22 +0.3 420,778 + Ac3H11_2190 0.22 +1.2 420,778 + Ac3H11_2190 0.22 +0.8 420,778 + Ac3H11_2190 0.22 -0.2 420,778 + Ac3H11_2190 0.22 +0.2 420,779 - Ac3H11_2190 0.23 +0.3 420,779 - Ac3H11_2190 0.23 +0.3 420,779 - Ac3H11_2190 0.23 +0.9 420,779 - Ac3H11_2190 0.23 +0.7 420,779 - Ac3H11_2190 0.23 +0.3 420,779 - Ac3H11_2190 0.23 +0.5 420,779 - Ac3H11_2190 0.23 +0.5 420,779 - Ac3H11_2190 0.23 -0.1 420,806 - Ac3H11_2190 0.25 +0.5 420,806 - Ac3H11_2190 0.25 +0.4 420,806 - Ac3H11_2190 0.25 +0.1 420,806 - Ac3H11_2190 0.25 -0.2 420,817 + Ac3H11_2190 0.27 -0.1 420,817 + Ac3H11_2190 0.27 +0.2 420,817 + Ac3H11_2190 0.27 +0.5 420,817 + Ac3H11_2190 0.27 -0.4 420,817 + Ac3H11_2190 0.27 +2.5 420,818 - Ac3H11_2190 0.27 -0.3 420,818 - Ac3H11_2190 0.27 -0.2 420,818 - Ac3H11_2190 0.27 +0.2 420,818 - Ac3H11_2190 0.27 +0.2 420,818 - Ac3H11_2190 0.27 -0.1 420,818 - Ac3H11_2190 0.27 +0.5 420,818 - Ac3H11_2190 0.27 -0.1 420,818 - Ac3H11_2190 0.27 -0.3 420,818 - Ac3H11_2190 0.27 -0.3 420,818 - Ac3H11_2190 0.27 +0.1 420,818 - Ac3H11_2190 0.27 -0.1 420,818 - Ac3H11_2190 0.27 +0.3 421,042 + Ac3H11_2190 0.51 -1.1 421,043 - Ac3H11_2190 0.51 -0.0 421,195 + Ac3H11_2190 0.68 +0.8 421,196 - Ac3H11_2190 0.68 +1.0 421,196 - Ac3H11_2190 0.68 -0.1 421,196 - Ac3H11_2190 0.68 -0.1 421,231 + Ac3H11_2190 0.72 -0.0 421,232 - Ac3H11_2190 0.72 +0.4 421,232 - Ac3H11_2190 0.72 +0.4 421,437 + +0.7 421,438 - +0.1 421,487 + -0.9 421,487 + +0.8 421,488 - +0.7 421,488 - +0.3 421,488 - -0.1 421,526 + +0.3 421,527 - +0.2 421,527 - +0.7 421,527 - +0.2 421,528 + +0.2 421,561 - +0.1 421,561 - +0.8 421,563 + +0.3 421,563 + -0.5 421,778 + Ac3H11_2191 0.35 -0.4 421,804 + Ac3H11_2191 0.41 -0.3 422,558 + Ac3H11_2192 0.55 +0.9 422,559 - Ac3H11_2192 0.55 -0.8 422,559 - Ac3H11_2192 0.55 +0.2 422,559 - Ac3H11_2192 0.55 +1.3 422,600 + Ac3H11_2192 0.59 +1.1 422,600 + Ac3H11_2192 0.59 +0.5 422,600 + Ac3H11_2192 0.59 +0.4 422,601 - Ac3H11_2192 0.60 -0.1 422,601 - Ac3H11_2192 0.60 -0.5 422,601 - Ac3H11_2192 0.60 +0.5 422,601 - Ac3H11_2192 0.60 -0.5 422,732 + Ac3H11_2192 0.75 +0.5 422,733 - Ac3H11_2192 0.75 +0.6 422,819 + Ac3H11_2192 0.85 +1.1
Or see this region's nucleotide sequence