Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS24540

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS24535 and AZOBR_RS24540 are separated by 13 nucleotidesAZOBR_RS24540 and AZOBR_RS24545 overlap by 4 nucleotidesAZOBR_RS24545 and AZOBR_RS24550 are separated by 13 nucleotides AZOBR_RS24535: AZOBR_RS24535 - formylmethanofuran dehydrogenase subunit A, at 562,501 to 564,162 _RS24535 AZOBR_RS24540: AZOBR_RS24540 - formylmethanofuran--tetrahydromethanopterin formyltransferase, at 564,176 to 565,075 _RS24540 AZOBR_RS24545: AZOBR_RS24545 - putative formylmethanofuran dehydrogenase subunit C, at 565,072 to 565,896 _RS24545 AZOBR_RS24550: AZOBR_RS24550 - branched-chain amino acid ABC transporter substrate-binding protein, at 565,910 to 567,100 _RS24550 Position (kb) 564 565 566Strain fitness (log2 ratio) -1 0 1at 563.668 kb on + strand, within AZOBR_RS24535at 563.780 kb on - strand, within AZOBR_RS24535at 563.888 kb on - strand, within AZOBR_RS24535at 564.019 kb on + strandat 564.020 kb on - strandat 564.540 kb on - strand, within AZOBR_RS24540at 564.587 kb on + strand, within AZOBR_RS24540at 564.806 kb on + strand, within AZOBR_RS24540at 564.806 kb on + strand, within AZOBR_RS24540at 564.806 kb on + strand, within AZOBR_RS24540at 564.806 kb on + strand, within AZOBR_RS24540at 564.806 kb on + strand, within AZOBR_RS24540at 564.806 kb on + strand, within AZOBR_RS24540at 564.806 kb on + strand, within AZOBR_RS24540at 564.807 kb on - strand, within AZOBR_RS24540at 565.348 kb on + strand, within AZOBR_RS24545at 565.839 kb on + strandat 566.004 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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563,668 + AZOBR_RS24535 0.70 +0.1
563,780 - AZOBR_RS24535 0.77 +0.2
563,888 - AZOBR_RS24535 0.83 +0.1
564,019 + -0.9
564,020 - +0.2
564,540 - AZOBR_RS24540 0.40 -0.3
564,587 + AZOBR_RS24540 0.46 -0.2
564,806 + AZOBR_RS24540 0.70 +0.4
564,806 + AZOBR_RS24540 0.70 -0.7
564,806 + AZOBR_RS24540 0.70 +0.4
564,806 + AZOBR_RS24540 0.70 +0.6
564,806 + AZOBR_RS24540 0.70 -0.4
564,806 + AZOBR_RS24540 0.70 -0.0
564,806 + AZOBR_RS24540 0.70 -0.8
564,807 - AZOBR_RS24540 0.70 -0.5
565,348 + AZOBR_RS24545 0.33 +0.3
565,839 + -0.0
566,004 - -0.6

Or see this region's nucleotide sequence