Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01645

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS01640 and AZOBR_RS01645 overlap by 29 nucleotidesAZOBR_RS01645 and AZOBR_RS01650 are separated by 266 nucleotides AZOBR_RS01640: AZOBR_RS01640 - hypothetical protein, at 335,607 to 336,788 _RS01640 AZOBR_RS01645: AZOBR_RS01645 - ABC transporter, at 336,760 to 338,376 _RS01645 AZOBR_RS01650: AZOBR_RS01650 - ATP-dependent protease, at 338,643 to 339,980 _RS01650 Position (kb) 336 337 338 339Strain fitness (log2 ratio) -2 -1 0 1at 335.856 kb on + strand, within AZOBR_RS01640at 335.856 kb on + strand, within AZOBR_RS01640at 335.856 kb on + strand, within AZOBR_RS01640at 335.857 kb on - strand, within AZOBR_RS01640at 335.857 kb on - strand, within AZOBR_RS01640at 335.857 kb on - strand, within AZOBR_RS01640at 335.868 kb on + strand, within AZOBR_RS01640at 335.869 kb on - strand, within AZOBR_RS01640at 336.201 kb on + strand, within AZOBR_RS01640at 336.201 kb on + strand, within AZOBR_RS01640at 336.201 kb on + strand, within AZOBR_RS01640at 336.201 kb on + strand, within AZOBR_RS01640at 336.201 kb on + strand, within AZOBR_RS01640at 336.201 kb on + strand, within AZOBR_RS01640at 336.201 kb on + strand, within AZOBR_RS01640at 336.202 kb on - strand, within AZOBR_RS01640at 336.202 kb on - strand, within AZOBR_RS01640at 336.202 kb on - strand, within AZOBR_RS01640at 336.202 kb on - strand, within AZOBR_RS01640at 336.202 kb on - strand, within AZOBR_RS01640at 336.202 kb on - strand, within AZOBR_RS01640at 336.202 kb on - strand, within AZOBR_RS01640at 336.863 kb on + strandat 337.326 kb on - strand, within AZOBR_RS01645at 338.474 kb on + strandat 338.528 kb on + strandat 338.529 kb on - strandat 338.645 kb on - strandat 338.911 kb on + strand, within AZOBR_RS01650at 338.911 kb on + strand, within AZOBR_RS01650at 338.911 kb on + strand, within AZOBR_RS01650at 338.912 kb on - strand, within AZOBR_RS01650at 338.912 kb on - strand, within AZOBR_RS01650at 338.912 kb on - strand, within AZOBR_RS01650at 338.912 kb on - strand, within AZOBR_RS01650at 338.912 kb on - strand, within AZOBR_RS01650at 339.178 kb on + strand, within AZOBR_RS01650at 339.178 kb on + strand, within AZOBR_RS01650at 339.313 kb on + strand, within AZOBR_RS01650at 339.313 kb on + strand, within AZOBR_RS01650at 339.313 kb on + strand, within AZOBR_RS01650at 339.313 kb on + strand, within AZOBR_RS01650at 339.314 kb on - strand, within AZOBR_RS01650at 339.314 kb on - strand, within AZOBR_RS01650

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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335,856 + AZOBR_RS01640 0.21 +0.4
335,856 + AZOBR_RS01640 0.21 -2.2
335,856 + AZOBR_RS01640 0.21 +0.6
335,857 - AZOBR_RS01640 0.21 -0.5
335,857 - AZOBR_RS01640 0.21 -0.7
335,857 - AZOBR_RS01640 0.21 -0.0
335,868 + AZOBR_RS01640 0.22 -0.4
335,869 - AZOBR_RS01640 0.22 +0.6
336,201 + AZOBR_RS01640 0.50 -0.4
336,201 + AZOBR_RS01640 0.50 -1.0
336,201 + AZOBR_RS01640 0.50 -0.6
336,201 + AZOBR_RS01640 0.50 +0.8
336,201 + AZOBR_RS01640 0.50 -0.1
336,201 + AZOBR_RS01640 0.50 -0.7
336,201 + AZOBR_RS01640 0.50 -1.6
336,202 - AZOBR_RS01640 0.50 +0.3
336,202 - AZOBR_RS01640 0.50 -0.3
336,202 - AZOBR_RS01640 0.50 -0.5
336,202 - AZOBR_RS01640 0.50 -0.1
336,202 - AZOBR_RS01640 0.50 -0.3
336,202 - AZOBR_RS01640 0.50 -0.7
336,202 - AZOBR_RS01640 0.50 -0.1
336,863 + -0.1
337,326 - AZOBR_RS01645 0.35 -2.5
338,474 + +0.0
338,528 + -0.3
338,529 - -0.9
338,645 - -0.7
338,911 + AZOBR_RS01650 0.20 -1.7
338,911 + AZOBR_RS01650 0.20 -0.6
338,911 + AZOBR_RS01650 0.20 +0.0
338,912 - AZOBR_RS01650 0.20 +0.0
338,912 - AZOBR_RS01650 0.20 -0.2
338,912 - AZOBR_RS01650 0.20 -0.8
338,912 - AZOBR_RS01650 0.20 +0.7
338,912 - AZOBR_RS01650 0.20 -0.6
339,178 + AZOBR_RS01650 0.40 +0.7
339,178 + AZOBR_RS01650 0.40 -0.5
339,313 + AZOBR_RS01650 0.50 +0.2
339,313 + AZOBR_RS01650 0.50 -0.1
339,313 + AZOBR_RS01650 0.50 +0.4
339,313 + AZOBR_RS01650 0.50 -0.1
339,314 - AZOBR_RS01650 0.50 -0.9
339,314 - AZOBR_RS01650 0.50 +0.2

Or see this region's nucleotide sequence