Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_18185

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_18185 and AO353_18190 are separated by 219 nucleotidesAO353_18190 and AO353_18195 are separated by 38 nucleotides AO353_18185: AO353_18185 - hypothetical protein, at 4,003,878 to 4,004,264 _18185 AO353_18190: AO353_18190 - LuxR family transcriptional regulator, at 4,004,484 to 4,005,131 _18190 AO353_18195: AO353_18195 - chemotaxis protein CheY, at 4,005,170 to 4,008,388 _18195 Position (kb) 4003 4004 4005Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4002.908 kb on + strandat 4002.908 kb on + strandat 4002.908 kb on + strandat 4002.908 kb on + strandat 4002.908 kb on + strandat 4002.908 kb on + strandat 4002.908 kb on + strandat 4002.908 kb on + strandat 4002.908 kb on + strandat 4002.909 kb on - strandat 4002.909 kb on - strandat 4002.909 kb on - strandat 4002.909 kb on - strandat 4002.909 kb on - strandat 4002.929 kb on + strandat 4002.929 kb on + strandat 4002.929 kb on + strandat 4002.930 kb on - strandat 4002.930 kb on - strandat 4002.985 kb on + strandat 4003.049 kb on + strandat 4003.049 kb on + strandat 4003.049 kb on + strandat 4003.050 kb on - strandat 4003.053 kb on + strandat 4003.053 kb on + strandat 4003.053 kb on + strandat 4003.053 kb on + strandat 4003.094 kb on + strandat 4003.094 kb on + strandat 4003.094 kb on + strandat 4003.095 kb on - strandat 4003.095 kb on - strandat 4003.095 kb on - strandat 4003.103 kb on + strandat 4003.103 kb on + strandat 4003.103 kb on + strandat 4003.103 kb on + strandat 4003.103 kb on + strandat 4003.103 kb on + strandat 4003.103 kb on + strandat 4003.103 kb on + strandat 4003.103 kb on + strandat 4003.103 kb on + strandat 4003.103 kb on + strandat 4003.103 kb on + strandat 4003.104 kb on - strandat 4003.104 kb on - strandat 4003.104 kb on - strandat 4003.104 kb on - strandat 4003.104 kb on - strandat 4003.104 kb on - strandat 4003.104 kb on - strandat 4003.104 kb on - strandat 4003.104 kb on - strandat 4003.104 kb on - strandat 4003.104 kb on - strandat 4003.104 kb on - strandat 4003.104 kb on - strandat 4003.104 kb on - strandat 4003.104 kb on - strandat 4003.167 kb on - strandat 4003.258 kb on + strandat 4003.258 kb on + strandat 4003.258 kb on + strandat 4003.258 kb on + strandat 4003.258 kb on + strandat 4003.258 kb on + strandat 4003.258 kb on + strandat 4003.258 kb on + strandat 4003.259 kb on - strandat 4003.259 kb on - strandat 4003.259 kb on - strandat 4003.259 kb on - strandat 4003.259 kb on - strandat 4003.260 kb on + strandat 4003.261 kb on - strandat 4003.261 kb on - strandat 4003.261 kb on - strandat 4003.310 kb on + strandat 4003.310 kb on + strandat 4003.310 kb on + strandat 4003.310 kb on + strandat 4003.310 kb on + strandat 4003.311 kb on - strandat 4003.354 kb on - strandat 4003.371 kb on + strandat 4003.439 kb on + strandat 4003.439 kb on + strandat 4003.439 kb on + strandat 4003.452 kb on + strandat 4003.472 kb on + strandat 4003.472 kb on + strandat 4003.472 kb on + strandat 4003.473 kb on - strandat 4003.473 kb on - strandat 4003.473 kb on - strandat 4003.479 kb on + strandat 4003.523 kb on + strandat 4003.523 kb on + strandat 4003.524 kb on - strandat 4003.524 kb on - strandat 4003.524 kb on - strandat 4003.524 kb on - strandat 4003.631 kb on + strandat 4003.631 kb on + strandat 4003.631 kb on + strandat 4003.631 kb on + strandat 4003.632 kb on - strandat 4003.632 kb on - strandat 4003.632 kb on - strandat 4003.632 kb on - strandat 4003.632 kb on - strandat 4003.632 kb on - strandat 4003.698 kb on + strandat 4003.698 kb on + strandat 4003.698 kb on + strandat 4003.698 kb on + strandat 4003.698 kb on + strandat 4003.699 kb on - strandat 4003.699 kb on - strandat 4003.699 kb on - strandat 4003.699 kb on - strandat 4003.700 kb on + strandat 4003.700 kb on + strandat 4003.700 kb on + strandat 4003.721 kb on + strandat 4003.750 kb on + strandat 4003.800 kb on + strandat 4003.801 kb on - strandat 4003.801 kb on - strandat 4003.825 kb on + strandat 4003.825 kb on + strandat 4003.825 kb on + strandat 4003.825 kb on + strandat 4003.826 kb on - strandat 4003.826 kb on - strandat 4003.843 kb on + strandat 4003.843 kb on + strandat 4003.843 kb on + strandat 4003.847 kb on + strandat 4003.847 kb on + strandat 4003.847 kb on + strandat 4003.847 kb on + strandat 4003.847 kb on + strandat 4003.847 kb on + strandat 4003.847 kb on + strandat 4003.847 kb on + strandat 4003.847 kb on + strandat 4003.850 kb on + strandat 4003.850 kb on + strandat 4003.850 kb on + strandat 4003.850 kb on + strandat 4003.850 kb on + strandat 4003.850 kb on + strandat 4003.850 kb on + strandat 4003.871 kb on + strandat 4003.871 kb on + strandat 4003.871 kb on + strandat 4003.871 kb on + strandat 4003.871 kb on + strandat 4003.871 kb on + strandat 4003.871 kb on + strandat 4003.872 kb on - strandat 4003.872 kb on - strandat 4003.872 kb on - strandat 4003.872 kb on - strandat 4003.872 kb on - strandat 4003.872 kb on - strandat 4003.872 kb on - strandat 4003.872 kb on - strandat 4003.872 kb on - strandat 4003.872 kb on - strandat 4003.872 kb on - strandat 4003.876 kb on + strandat 4003.876 kb on + strandat 4003.876 kb on + strandat 4003.876 kb on + strandat 4003.877 kb on - strandat 4003.877 kb on - strandat 4003.877 kb on - strandat 4003.877 kb on - strandat 4003.877 kb on - strandat 4003.877 kb on - strandat 4003.899 kb on + strandat 4003.899 kb on + strandat 4003.900 kb on - strandat 4003.900 kb on - strandat 4003.900 kb on - strandat 4003.901 kb on + strandat 4003.901 kb on + strandat 4003.901 kb on + strandat 4003.901 kb on + strandat 4003.901 kb on + strandat 4003.901 kb on + strandat 4003.901 kb on + strandat 4003.902 kb on - strandat 4003.902 kb on - strandat 4003.902 kb on - strandat 4003.902 kb on - strandat 4003.902 kb on - strandat 4003.902 kb on - strandat 4003.902 kb on - strandat 4003.902 kb on - strandat 4003.902 kb on - strandat 4003.902 kb on - strandat 4003.902 kb on - strandat 4003.982 kb on + strand, within AO353_18185at 4003.990 kb on + strand, within AO353_18185at 4004.020 kb on + strand, within AO353_18185at 4004.020 kb on + strand, within AO353_18185at 4004.036 kb on + strand, within AO353_18185at 4004.036 kb on + strand, within AO353_18185at 4004.051 kb on + strand, within AO353_18185at 4004.051 kb on + strand, within AO353_18185at 4004.051 kb on + strand, within AO353_18185at 4004.051 kb on + strand, within AO353_18185at 4004.126 kb on + strand, within AO353_18185at 4004.126 kb on + strand, within AO353_18185at 4004.127 kb on - strand, within AO353_18185at 4004.127 kb on - strand, within AO353_18185at 4004.127 kb on - strand, within AO353_18185at 4004.127 kb on - strand, within AO353_18185at 4004.262 kb on + strandat 4004.263 kb on - strandat 4004.263 kb on - strandat 4004.263 kb on - strandat 4004.263 kb on - strandat 4004.270 kb on + strandat 4004.270 kb on + strandat 4004.270 kb on + strandat 4004.271 kb on - strandat 4004.271 kb on - strandat 4004.271 kb on - strandat 4004.285 kb on - strandat 4004.285 kb on - strandat 4004.288 kb on + strandat 4004.288 kb on + strandat 4004.288 kb on + strandat 4004.288 kb on + strandat 4004.288 kb on + strandat 4004.289 kb on - strandat 4004.315 kb on + strandat 4004.316 kb on - strandat 4004.316 kb on - strandat 4004.316 kb on - strandat 4004.399 kb on + strandat 4004.399 kb on + strandat 4004.400 kb on - strandat 4004.400 kb on - strandat 4004.498 kb on + strandat 4004.499 kb on - strandat 4004.512 kb on + strandat 4004.512 kb on + strandat 4004.512 kb on + strandat 4004.512 kb on + strandat 4004.512 kb on + strandat 4004.512 kb on + strandat 4004.512 kb on + strandat 4004.512 kb on + strandat 4004.512 kb on + strandat 4004.513 kb on - strandat 4004.513 kb on - strandat 4004.513 kb on - strandat 4004.513 kb on - strandat 4004.513 kb on - strandat 4004.513 kb on - strandat 4004.513 kb on - strandat 4004.513 kb on - strandat 4004.573 kb on + strand, within AO353_18190at 4004.573 kb on + strand, within AO353_18190at 4004.574 kb on - strand, within AO353_18190at 4004.586 kb on + strand, within AO353_18190at 4004.586 kb on + strand, within AO353_18190at 4004.586 kb on + strand, within AO353_18190at 4004.587 kb on - strand, within AO353_18190at 4004.793 kb on + strand, within AO353_18190at 4004.793 kb on + strand, within AO353_18190at 4004.793 kb on + strand, within AO353_18190at 4004.793 kb on + strand, within AO353_18190at 4004.793 kb on + strand, within AO353_18190at 4004.793 kb on + strand, within AO353_18190at 4004.793 kb on + strand, within AO353_18190at 4004.793 kb on + strand, within AO353_18190at 4004.793 kb on + strand, within AO353_18190at 4004.793 kb on + strand, within AO353_18190at 4004.793 kb on + strand, within AO353_18190at 4004.793 kb on + strand, within AO353_18190at 4004.793 kb on + strand, within AO353_18190at 4004.794 kb on - strand, within AO353_18190at 4004.794 kb on - strand, within AO353_18190at 4004.794 kb on - strand, within AO353_18190at 4004.794 kb on - strand, within AO353_18190at 4004.794 kb on - strand, within AO353_18190at 4004.794 kb on - strand, within AO353_18190at 4004.794 kb on - strand, within AO353_18190at 4004.794 kb on - strand, within AO353_18190at 4004.794 kb on - strand, within AO353_18190at 4004.794 kb on - strand, within AO353_18190at 4004.794 kb on - strand, within AO353_18190at 4004.794 kb on - strand, within AO353_18190at 4004.911 kb on + strand, within AO353_18190at 4004.911 kb on + strand, within AO353_18190at 4004.911 kb on + strand, within AO353_18190at 4004.911 kb on + strand, within AO353_18190at 4004.912 kb on - strand, within AO353_18190at 4005.064 kb on - strand, within AO353_18190at 4005.064 kb on - strand, within AO353_18190at 4005.064 kb on - strand, within AO353_18190at 4005.075 kb on + strandat 4005.075 kb on + strandat 4005.075 kb on + strandat 4005.075 kb on + strandat 4005.075 kb on + strandat 4005.075 kb on + strandat 4005.075 kb on + strandat 4005.076 kb on - strandat 4005.076 kb on - strandat 4005.076 kb on - strandat 4005.076 kb on - strandat 4005.076 kb on - strandat 4005.085 kb on - strandat 4005.087 kb on + strandat 4005.087 kb on + strandat 4005.087 kb on + strandat 4005.087 kb on + strandat 4005.087 kb on + strandat 4005.087 kb on + strandat 4005.088 kb on - strandat 4005.088 kb on - strandat 4005.088 kb on - strandat 4005.088 kb on - strandat 4005.164 kb on + strandat 4005.164 kb on + strandat 4005.165 kb on - strandat 4005.165 kb on - strandat 4005.165 kb on - strandat 4005.172 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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4,002,908 + -0.9
4,002,908 + +0.5
4,002,908 + -0.5
4,002,908 + -0.5
4,002,908 + +1.3
4,002,908 + +1.0
4,002,908 + +0.4
4,002,908 + -0.8
4,002,908 + +0.9
4,002,909 - -0.8
4,002,909 - +0.6
4,002,909 - -0.3
4,002,909 - +0.1
4,002,909 - -1.8
4,002,929 + -1.9
4,002,929 + -0.8
4,002,929 + -1.5
4,002,930 - +0.1
4,002,930 - +0.6
4,002,985 + +0.2
4,003,049 + -0.3
4,003,049 + +1.0
4,003,049 + +2.3
4,003,050 - -1.5
4,003,053 + +0.2
4,003,053 + -0.5
4,003,053 + +0.1
4,003,053 + +1.3
4,003,094 + +1.8
4,003,094 + +0.4
4,003,094 + -0.1
4,003,095 - -0.7
4,003,095 - -0.7
4,003,095 - +0.3
4,003,103 + -0.6
4,003,103 + +0.5
4,003,103 + +0.5
4,003,103 + -1.1
4,003,103 + +0.0
4,003,103 + +0.3
4,003,103 + -0.5
4,003,103 + -0.3
4,003,103 + -0.6
4,003,103 + +0.4
4,003,103 + -0.6
4,003,103 + +1.2
4,003,104 - +0.4
4,003,104 - -1.3
4,003,104 - -0.5
4,003,104 - +0.4
4,003,104 - -2.1
4,003,104 - -0.3
4,003,104 - +2.1
4,003,104 - -1.4
4,003,104 - -1.0
4,003,104 - -1.0
4,003,104 - -1.1
4,003,104 - -0.1
4,003,104 - -0.1
4,003,104 - -1.3
4,003,104 - -1.1
4,003,167 - +0.3
4,003,258 + +1.9
4,003,258 + -0.1
4,003,258 + -0.9
4,003,258 + -0.9
4,003,258 + +0.4
4,003,258 + +3.7
4,003,258 + -0.3
4,003,258 + -0.1
4,003,259 - -1.1
4,003,259 - -0.4
4,003,259 - -0.7
4,003,259 - +0.2
4,003,259 - +0.6
4,003,260 + +1.5
4,003,261 - -1.7
4,003,261 - -1.3
4,003,261 - +1.9
4,003,310 + +0.2
4,003,310 + +0.9
4,003,310 + -2.2
4,003,310 + +0.3
4,003,310 + -1.2
4,003,311 - -0.9
4,003,354 - +2.0
4,003,371 + +0.3
4,003,439 + -1.8
4,003,439 + -1.9
4,003,439 + -0.5
4,003,452 + -0.5
4,003,472 + -0.7
4,003,472 + +0.2
4,003,472 + +0.5
4,003,473 - -0.1
4,003,473 - +0.5
4,003,473 - +0.2
4,003,479 + +0.2
4,003,523 + +0.8
4,003,523 + -0.2
4,003,524 - +0.8
4,003,524 - -2.2
4,003,524 - +0.5
4,003,524 - +0.9
4,003,631 + +0.7
4,003,631 + -1.5
4,003,631 + +1.9
4,003,631 + +0.0
4,003,632 - -1.9
4,003,632 - -0.2
4,003,632 - +0.1
4,003,632 - +2.7
4,003,632 - -0.3
4,003,632 - +0.4
4,003,698 + -1.7
4,003,698 + +1.5
4,003,698 + +0.2
4,003,698 + +0.7
4,003,698 + -0.3
4,003,699 - -0.5
4,003,699 - -0.7
4,003,699 - -0.1
4,003,699 - -0.2
4,003,700 + -0.3
4,003,700 + +1.9
4,003,700 + +0.6
4,003,721 + -0.2
4,003,750 + -0.3
4,003,800 + -0.5
4,003,801 - -2.2
4,003,801 - -0.8
4,003,825 + -0.9
4,003,825 + -0.8
4,003,825 + -1.1
4,003,825 + -0.1
4,003,826 - -0.2
4,003,826 - -0.2
4,003,843 + -0.8
4,003,843 + +0.1
4,003,843 + -0.3
4,003,847 + +0.1
4,003,847 + +1.0
4,003,847 + -1.7
4,003,847 + +1.5
4,003,847 + -1.3
4,003,847 + -0.5
4,003,847 + +1.2
4,003,847 + -1.1
4,003,847 + -0.5
4,003,850 + -0.9
4,003,850 + -0.7
4,003,850 + +0.5
4,003,850 + +1.1
4,003,850 + -0.2
4,003,850 + -1.3
4,003,850 + -0.3
4,003,871 + -0.4
4,003,871 + -0.7
4,003,871 + -1.4
4,003,871 + +0.3
4,003,871 + -0.8
4,003,871 + +0.3
4,003,871 + -0.6
4,003,872 - -0.3
4,003,872 - +1.5
4,003,872 - +0.2
4,003,872 - -2.1
4,003,872 - +1.1
4,003,872 - -1.5
4,003,872 - +0.9
4,003,872 - -0.5
4,003,872 - +1.5
4,003,872 - +0.8
4,003,872 - -0.8
4,003,876 + -1.3
4,003,876 + -0.7
4,003,876 + +0.6
4,003,876 + +0.1
4,003,877 - -0.7
4,003,877 - -1.4
4,003,877 - +0.1
4,003,877 - -0.8
4,003,877 - -0.7
4,003,877 - -1.1
4,003,899 + -0.5
4,003,899 + -0.1
4,003,900 - +0.3
4,003,900 - +0.3
4,003,900 - +0.0
4,003,901 + +0.4
4,003,901 + +1.3
4,003,901 + -1.4
4,003,901 + +2.1
4,003,901 + -0.4
4,003,901 + -0.2
4,003,901 + +1.0
4,003,902 - +0.3
4,003,902 - -0.1
4,003,902 - +0.6
4,003,902 - +0.2
4,003,902 - +0.9
4,003,902 - -0.8
4,003,902 - -1.4
4,003,902 - -1.9
4,003,902 - -0.5
4,003,902 - +0.4
4,003,902 - +0.2
4,003,982 + AO353_18185 0.27 -0.5
4,003,990 + AO353_18185 0.29 -2.8
4,004,020 + AO353_18185 0.37 +1.5
4,004,020 + AO353_18185 0.37 +0.1
4,004,036 + AO353_18185 0.41 +1.2
4,004,036 + AO353_18185 0.41 +1.6
4,004,051 + AO353_18185 0.45 +0.8
4,004,051 + AO353_18185 0.45 -0.2
4,004,051 + AO353_18185 0.45 +0.1
4,004,051 + AO353_18185 0.45 +1.0
4,004,126 + AO353_18185 0.64 +0.9
4,004,126 + AO353_18185 0.64 +0.6
4,004,127 - AO353_18185 0.64 -0.1
4,004,127 - AO353_18185 0.64 +0.5
4,004,127 - AO353_18185 0.64 -0.5
4,004,127 - AO353_18185 0.64 -1.4
4,004,262 + -0.2
4,004,263 - +0.3
4,004,263 - -0.8
4,004,263 - +2.1
4,004,263 - +0.9
4,004,270 + +0.2
4,004,270 + -0.9
4,004,270 + -1.1
4,004,271 - -1.3
4,004,271 - +0.8
4,004,271 - -0.4
4,004,285 - -0.9
4,004,285 - -1.4
4,004,288 + -1.7
4,004,288 + -0.7
4,004,288 + +1.2
4,004,288 + +0.9
4,004,288 + -0.7
4,004,289 - -0.8
4,004,315 + -0.8
4,004,316 - +1.2
4,004,316 - +1.1
4,004,316 - +0.5
4,004,399 + -0.5
4,004,399 + +0.7
4,004,400 - -0.3
4,004,400 - -0.1
4,004,498 + -0.1
4,004,499 - +0.6
4,004,512 + -0.7
4,004,512 + +0.9
4,004,512 + -0.1
4,004,512 + -1.1
4,004,512 + -1.3
4,004,512 + -1.1
4,004,512 + +0.9
4,004,512 + -1.5
4,004,512 + +0.3
4,004,513 - -0.1
4,004,513 - +1.2
4,004,513 - -0.5
4,004,513 - -1.3
4,004,513 - +0.5
4,004,513 - -1.1
4,004,513 - +0.1
4,004,513 - +0.9
4,004,573 + AO353_18190 0.14 -0.4
4,004,573 + AO353_18190 0.14 -1.2
4,004,574 - AO353_18190 0.14 +0.8
4,004,586 + AO353_18190 0.16 -0.8
4,004,586 + AO353_18190 0.16 -0.7
4,004,586 + AO353_18190 0.16 -0.1
4,004,587 - AO353_18190 0.16 +0.2
4,004,793 + AO353_18190 0.48 +1.3
4,004,793 + AO353_18190 0.48 -0.7
4,004,793 + AO353_18190 0.48 -0.3
4,004,793 + AO353_18190 0.48 -1.3
4,004,793 + AO353_18190 0.48 +0.8
4,004,793 + AO353_18190 0.48 -0.1
4,004,793 + AO353_18190 0.48 -0.6
4,004,793 + AO353_18190 0.48 -1.7
4,004,793 + AO353_18190 0.48 +0.0
4,004,793 + AO353_18190 0.48 +0.1
4,004,793 + AO353_18190 0.48 +0.9
4,004,793 + AO353_18190 0.48 -1.1
4,004,793 + AO353_18190 0.48 -0.6
4,004,794 - AO353_18190 0.48 -1.1
4,004,794 - AO353_18190 0.48 -0.3
4,004,794 - AO353_18190 0.48 +0.0
4,004,794 - AO353_18190 0.48 -0.8
4,004,794 - AO353_18190 0.48 -0.1
4,004,794 - AO353_18190 0.48 +0.5
4,004,794 - AO353_18190 0.48 +1.5
4,004,794 - AO353_18190 0.48 +0.2
4,004,794 - AO353_18190 0.48 +0.1
4,004,794 - AO353_18190 0.48 -0.5
4,004,794 - AO353_18190 0.48 -0.9
4,004,794 - AO353_18190 0.48 +0.2
4,004,911 + AO353_18190 0.66 -1.0
4,004,911 + AO353_18190 0.66 -0.7
4,004,911 + AO353_18190 0.66 -0.9
4,004,911 + AO353_18190 0.66 +0.2
4,004,912 - AO353_18190 0.66 -2.4
4,005,064 - AO353_18190 0.90 -1.1
4,005,064 - AO353_18190 0.90 +0.8
4,005,064 - AO353_18190 0.90 +0.3
4,005,075 + -0.3
4,005,075 + -0.2
4,005,075 + +0.5
4,005,075 + -0.4
4,005,075 + +1.0
4,005,075 + -0.5
4,005,075 + -0.4
4,005,076 - +2.5
4,005,076 - +0.1
4,005,076 - -0.6
4,005,076 - -0.1
4,005,076 - +0.5
4,005,085 - -0.1
4,005,087 + +0.3
4,005,087 + +0.5
4,005,087 + +0.5
4,005,087 + -0.1
4,005,087 + -1.8
4,005,087 + -1.1
4,005,088 - +0.3
4,005,088 - -0.2
4,005,088 - -0.3
4,005,088 - +1.5
4,005,164 + -0.4
4,005,164 + +1.2
4,005,165 - -0.8
4,005,165 - +0.5
4,005,165 - +0.5
4,005,172 - +0.6

Or see this region's nucleotide sequence