Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004752

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004751 and ABIE53_004752 are separated by 15 nucleotidesABIE53_004752 and ABIE53_004753 are separated by 154 nucleotides ABIE53_004751: ABIE53_004751 - putative spermidine/putrescine transport system permease protein, at 954,797 to 956,074 _004751 ABIE53_004752: ABIE53_004752 - putative spermidine/putrescine transport system permease protein, at 956,090 to 956,929 _004752 ABIE53_004753: ABIE53_004753 - OOP family OmpA-OmpF porin, at 957,084 to 958,145 _004753 Position (kb) 956 957Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 955.155 kb on - strand, within ABIE53_004751at 955.286 kb on + strand, within ABIE53_004751at 955.331 kb on + strand, within ABIE53_004751at 955.331 kb on + strand, within ABIE53_004751at 955.331 kb on + strand, within ABIE53_004751at 955.331 kb on + strand, within ABIE53_004751at 955.406 kb on + strand, within ABIE53_004751at 955.406 kb on + strand, within ABIE53_004751at 955.406 kb on + strand, within ABIE53_004751at 955.407 kb on - strand, within ABIE53_004751at 955.407 kb on - strand, within ABIE53_004751at 955.407 kb on - strand, within ABIE53_004751at 955.450 kb on + strand, within ABIE53_004751at 955.451 kb on - strand, within ABIE53_004751at 955.685 kb on + strand, within ABIE53_004751at 955.686 kb on - strand, within ABIE53_004751at 955.688 kb on - strand, within ABIE53_004751at 955.688 kb on - strand, within ABIE53_004751at 955.733 kb on + strand, within ABIE53_004751at 955.734 kb on - strand, within ABIE53_004751at 955.734 kb on - strand, within ABIE53_004751at 955.764 kb on - strand, within ABIE53_004751at 955.820 kb on + strand, within ABIE53_004751at 955.820 kb on + strand, within ABIE53_004751at 955.820 kb on + strand, within ABIE53_004751at 955.820 kb on + strand, within ABIE53_004751at 955.821 kb on - strand, within ABIE53_004751at 955.821 kb on - strand, within ABIE53_004751at 955.821 kb on - strand, within ABIE53_004751at 955.821 kb on - strand, within ABIE53_004751at 955.821 kb on - strand, within ABIE53_004751at 955.821 kb on - strand, within ABIE53_004751at 955.821 kb on - strand, within ABIE53_004751at 955.821 kb on - strand, within ABIE53_004751at 955.821 kb on - strand, within ABIE53_004751at 955.821 kb on - strand, within ABIE53_004751at 955.821 kb on - strand, within ABIE53_004751at 955.887 kb on - strand, within ABIE53_004751at 955.887 kb on - strand, within ABIE53_004751at 955.889 kb on + strand, within ABIE53_004751at 955.889 kb on + strand, within ABIE53_004751at 955.889 kb on + strand, within ABIE53_004751at 955.889 kb on + strand, within ABIE53_004751at 955.889 kb on + strand, within ABIE53_004751at 955.889 kb on + strand, within ABIE53_004751at 955.890 kb on - strand, within ABIE53_004751at 955.890 kb on - strand, within ABIE53_004751at 955.890 kb on - strand, within ABIE53_004751at 955.890 kb on - strand, within ABIE53_004751at 955.937 kb on + strand, within ABIE53_004751at 955.937 kb on + strand, within ABIE53_004751at 955.937 kb on + strand, within ABIE53_004751at 955.938 kb on - strand, within ABIE53_004751at 955.940 kb on + strand, within ABIE53_004751at 955.940 kb on + strand, within ABIE53_004751at 955.940 kb on + strand, within ABIE53_004751at 955.940 kb on + strand, within ABIE53_004751at 955.940 kb on + strand, within ABIE53_004751at 955.940 kb on + strand, within ABIE53_004751at 955.940 kb on + strand, within ABIE53_004751at 955.941 kb on - strand, within ABIE53_004751at 955.941 kb on - strand, within ABIE53_004751at 955.941 kb on - strand, within ABIE53_004751at 955.941 kb on - strand, within ABIE53_004751at 955.949 kb on + strandat 955.950 kb on - strandat 955.950 kb on - strandat 956.027 kb on + strandat 956.027 kb on + strandat 956.027 kb on + strandat 956.027 kb on + strandat 956.027 kb on + strandat 956.027 kb on + strandat 956.027 kb on + strandat 956.027 kb on + strandat 956.028 kb on - strandat 956.028 kb on - strandat 956.028 kb on - strandat 956.028 kb on - strandat 956.028 kb on - strandat 956.028 kb on - strandat 956.028 kb on - strandat 956.036 kb on + strandat 956.036 kb on + strandat 956.036 kb on + strandat 956.036 kb on + strandat 956.036 kb on + strandat 956.036 kb on + strandat 956.037 kb on - strandat 956.037 kb on - strandat 956.083 kb on + strandat 956.147 kb on + strandat 956.148 kb on - strandat 956.148 kb on - strandat 956.186 kb on + strand, within ABIE53_004752at 956.186 kb on + strand, within ABIE53_004752at 956.187 kb on - strand, within ABIE53_004752at 956.236 kb on + strand, within ABIE53_004752at 956.236 kb on + strand, within ABIE53_004752at 956.237 kb on - strand, within ABIE53_004752at 956.237 kb on - strand, within ABIE53_004752at 956.250 kb on - strand, within ABIE53_004752at 956.311 kb on + strand, within ABIE53_004752at 956.312 kb on - strand, within ABIE53_004752at 956.312 kb on - strand, within ABIE53_004752at 956.326 kb on + strand, within ABIE53_004752at 956.326 kb on + strand, within ABIE53_004752at 956.332 kb on + strand, within ABIE53_004752at 956.333 kb on - strand, within ABIE53_004752at 956.356 kb on - strand, within ABIE53_004752at 956.356 kb on - strand, within ABIE53_004752at 956.486 kb on + strand, within ABIE53_004752at 956.486 kb on + strand, within ABIE53_004752at 956.487 kb on - strand, within ABIE53_004752at 956.487 kb on - strand, within ABIE53_004752at 956.487 kb on - strand, within ABIE53_004752at 956.487 kb on - strand, within ABIE53_004752at 956.487 kb on - strand, within ABIE53_004752at 956.487 kb on - strand, within ABIE53_004752at 956.487 kb on - strand, within ABIE53_004752at 956.518 kb on + strand, within ABIE53_004752at 956.518 kb on + strand, within ABIE53_004752at 956.518 kb on + strand, within ABIE53_004752at 956.518 kb on + strand, within ABIE53_004752at 956.518 kb on + strand, within ABIE53_004752at 956.519 kb on - strand, within ABIE53_004752at 956.519 kb on - strand, within ABIE53_004752at 956.519 kb on - strand, within ABIE53_004752at 956.519 kb on - strand, within ABIE53_004752at 956.519 kb on - strand, within ABIE53_004752at 956.522 kb on + strand, within ABIE53_004752at 956.522 kb on + strand, within ABIE53_004752at 956.522 kb on + strand, within ABIE53_004752at 956.522 kb on + strand, within ABIE53_004752at 956.522 kb on + strand, within ABIE53_004752at 956.522 kb on + strand, within ABIE53_004752at 956.522 kb on + strand, within ABIE53_004752at 956.522 kb on + strand, within ABIE53_004752at 956.523 kb on - strand, within ABIE53_004752at 956.523 kb on - strand, within ABIE53_004752at 956.523 kb on - strand, within ABIE53_004752at 956.523 kb on - strand, within ABIE53_004752at 956.523 kb on - strand, within ABIE53_004752at 956.523 kb on - strand, within ABIE53_004752at 956.523 kb on - strand, within ABIE53_004752at 956.523 kb on - strand, within ABIE53_004752at 956.523 kb on - strand, within ABIE53_004752at 956.523 kb on - strand, within ABIE53_004752at 956.523 kb on - strand, within ABIE53_004752at 956.606 kb on + strand, within ABIE53_004752at 956.607 kb on - strand, within ABIE53_004752at 956.607 kb on - strand, within ABIE53_004752at 956.871 kb on + strandat 956.872 kb on - strandat 956.927 kb on + strandat 957.000 kb on + strandat 957.001 kb on - strandat 957.039 kb on + strandat 957.039 kb on + strandat 957.040 kb on - strandat 957.040 kb on - strandat 957.045 kb on + strandat 957.046 kb on - strandat 957.056 kb on - strandat 957.056 kb on - strandat 957.078 kb on + strandat 957.078 kb on + strandat 957.079 kb on - strandat 957.253 kb on - strand, within ABIE53_004753at 957.253 kb on - strand, within ABIE53_004753at 957.253 kb on - strand, within ABIE53_004753at 957.536 kb on + strand, within ABIE53_004753at 957.536 kb on + strand, within ABIE53_004753at 957.536 kb on + strand, within ABIE53_004753at 957.536 kb on + strand, within ABIE53_004753at 957.536 kb on + strand, within ABIE53_004753at 957.537 kb on - strand, within ABIE53_004753at 957.537 kb on - strand, within ABIE53_004753at 957.637 kb on + strand, within ABIE53_004753at 957.684 kb on - strand, within ABIE53_004753at 957.684 kb on - strand, within ABIE53_004753at 957.692 kb on + strand, within ABIE53_004753at 957.692 kb on + strand, within ABIE53_004753at 957.693 kb on - strand, within ABIE53_004753at 957.693 kb on - strand, within ABIE53_004753at 957.763 kb on + strand, within ABIE53_004753at 957.764 kb on - strand, within ABIE53_004753

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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955,155 - ABIE53_004751 0.28 +0.2
955,286 + ABIE53_004751 0.38 -0.3
955,331 + ABIE53_004751 0.42 -1.3
955,331 + ABIE53_004751 0.42 -0.7
955,331 + ABIE53_004751 0.42 +0.0
955,331 + ABIE53_004751 0.42 -0.8
955,406 + ABIE53_004751 0.48 +0.8
955,406 + ABIE53_004751 0.48 -0.4
955,406 + ABIE53_004751 0.48 -0.7
955,407 - ABIE53_004751 0.48 -1.9
955,407 - ABIE53_004751 0.48 -1.7
955,407 - ABIE53_004751 0.48 -0.1
955,450 + ABIE53_004751 0.51 +0.2
955,451 - ABIE53_004751 0.51 -2.1
955,685 + ABIE53_004751 0.69 +0.4
955,686 - ABIE53_004751 0.70 -2.0
955,688 - ABIE53_004751 0.70 -0.2
955,688 - ABIE53_004751 0.70 +1.6
955,733 + ABIE53_004751 0.73 -1.2
955,734 - ABIE53_004751 0.73 -0.7
955,734 - ABIE53_004751 0.73 +3.3
955,764 - ABIE53_004751 0.76 -0.3
955,820 + ABIE53_004751 0.80 -1.9
955,820 + ABIE53_004751 0.80 -1.4
955,820 + ABIE53_004751 0.80 +0.3
955,820 + ABIE53_004751 0.80 -1.2
955,821 - ABIE53_004751 0.80 -0.2
955,821 - ABIE53_004751 0.80 +1.7
955,821 - ABIE53_004751 0.80 +0.2
955,821 - ABIE53_004751 0.80 -0.2
955,821 - ABIE53_004751 0.80 -1.7
955,821 - ABIE53_004751 0.80 +0.7
955,821 - ABIE53_004751 0.80 +0.3
955,821 - ABIE53_004751 0.80 -0.1
955,821 - ABIE53_004751 0.80 +0.2
955,821 - ABIE53_004751 0.80 -0.1
955,821 - ABIE53_004751 0.80 +0.3
955,887 - ABIE53_004751 0.85 +0.9
955,887 - ABIE53_004751 0.85 +0.3
955,889 + ABIE53_004751 0.85 +0.9
955,889 + ABIE53_004751 0.85 -0.9
955,889 + ABIE53_004751 0.85 -0.2
955,889 + ABIE53_004751 0.85 -2.9
955,889 + ABIE53_004751 0.85 -0.5
955,889 + ABIE53_004751 0.85 -1.1
955,890 - ABIE53_004751 0.86 +0.0
955,890 - ABIE53_004751 0.86 -0.3
955,890 - ABIE53_004751 0.86 +0.7
955,890 - ABIE53_004751 0.86 +0.7
955,937 + ABIE53_004751 0.89 +0.1
955,937 + ABIE53_004751 0.89 +1.7
955,937 + ABIE53_004751 0.89 -0.4
955,938 - ABIE53_004751 0.89 -0.1
955,940 + ABIE53_004751 0.89 -0.8
955,940 + ABIE53_004751 0.89 -0.8
955,940 + ABIE53_004751 0.89 -1.8
955,940 + ABIE53_004751 0.89 +0.5
955,940 + ABIE53_004751 0.89 +0.5
955,940 + ABIE53_004751 0.89 +1.3
955,940 + ABIE53_004751 0.89 -1.1
955,941 - ABIE53_004751 0.90 +0.2
955,941 - ABIE53_004751 0.90 +0.9
955,941 - ABIE53_004751 0.90 +1.0
955,941 - ABIE53_004751 0.90 -1.1
955,949 + +0.5
955,950 - -0.4
955,950 - +0.3
956,027 + -0.4
956,027 + -1.1
956,027 + -0.7
956,027 + +1.7
956,027 + -0.6
956,027 + -0.5
956,027 + -1.5
956,027 + +0.6
956,028 - -0.1
956,028 - -0.5
956,028 - -1.8
956,028 - +1.7
956,028 - +1.1
956,028 - +0.2
956,028 - -1.2
956,036 + -0.8
956,036 + +1.3
956,036 + +0.1
956,036 + -2.7
956,036 + +0.3
956,036 + -0.4
956,037 - -0.8
956,037 - -0.1
956,083 + -0.4
956,147 + -0.6
956,148 - +0.2
956,148 - +0.7
956,186 + ABIE53_004752 0.11 -1.1
956,186 + ABIE53_004752 0.11 +0.0
956,187 - ABIE53_004752 0.12 +0.7
956,236 + ABIE53_004752 0.17 -0.7
956,236 + ABIE53_004752 0.17 +0.3
956,237 - ABIE53_004752 0.17 +0.7
956,237 - ABIE53_004752 0.17 -0.7
956,250 - ABIE53_004752 0.19 -0.5
956,311 + ABIE53_004752 0.26 +0.2
956,312 - ABIE53_004752 0.26 -0.3
956,312 - ABIE53_004752 0.26 -0.2
956,326 + ABIE53_004752 0.28 +1.4
956,326 + ABIE53_004752 0.28 +1.7
956,332 + ABIE53_004752 0.29 -0.4
956,333 - ABIE53_004752 0.29 +1.5
956,356 - ABIE53_004752 0.32 +0.5
956,356 - ABIE53_004752 0.32 -1.0
956,486 + ABIE53_004752 0.47 -0.7
956,486 + ABIE53_004752 0.47 -0.5
956,487 - ABIE53_004752 0.47 +0.7
956,487 - ABIE53_004752 0.47 -1.6
956,487 - ABIE53_004752 0.47 -0.9
956,487 - ABIE53_004752 0.47 +0.1
956,487 - ABIE53_004752 0.47 -1.8
956,487 - ABIE53_004752 0.47 -0.4
956,487 - ABIE53_004752 0.47 +0.2
956,518 + ABIE53_004752 0.51 -0.5
956,518 + ABIE53_004752 0.51 -0.4
956,518 + ABIE53_004752 0.51 +1.3
956,518 + ABIE53_004752 0.51 -0.1
956,518 + ABIE53_004752 0.51 -0.6
956,519 - ABIE53_004752 0.51 -0.5
956,519 - ABIE53_004752 0.51 -0.8
956,519 - ABIE53_004752 0.51 -0.6
956,519 - ABIE53_004752 0.51 -0.5
956,519 - ABIE53_004752 0.51 -0.7
956,522 + ABIE53_004752 0.51 +0.7
956,522 + ABIE53_004752 0.51 +1.9
956,522 + ABIE53_004752 0.51 +0.2
956,522 + ABIE53_004752 0.51 -1.9
956,522 + ABIE53_004752 0.51 +0.2
956,522 + ABIE53_004752 0.51 +0.6
956,522 + ABIE53_004752 0.51 -0.5
956,522 + ABIE53_004752 0.51 +0.2
956,523 - ABIE53_004752 0.52 -1.8
956,523 - ABIE53_004752 0.52 +3.3
956,523 - ABIE53_004752 0.52 +0.7
956,523 - ABIE53_004752 0.52 -0.8
956,523 - ABIE53_004752 0.52 +1.2
956,523 - ABIE53_004752 0.52 -0.8
956,523 - ABIE53_004752 0.52 +0.8
956,523 - ABIE53_004752 0.52 -0.1
956,523 - ABIE53_004752 0.52 -2.0
956,523 - ABIE53_004752 0.52 +0.6
956,523 - ABIE53_004752 0.52 +0.1
956,606 + ABIE53_004752 0.61 +1.5
956,607 - ABIE53_004752 0.62 +1.5
956,607 - ABIE53_004752 0.62 -1.1
956,871 + +0.7
956,872 - -1.1
956,927 + -1.2
957,000 + +0.7
957,001 - +0.5
957,039 + +1.7
957,039 + -0.4
957,040 - +1.2
957,040 - -0.7
957,045 + +0.2
957,046 - +0.5
957,056 - -0.4
957,056 - -0.6
957,078 + +0.5
957,078 + -0.7
957,079 - +0.4
957,253 - ABIE53_004753 0.16 -0.1
957,253 - ABIE53_004753 0.16 +0.2
957,253 - ABIE53_004753 0.16 -0.9
957,536 + ABIE53_004753 0.43 -0.1
957,536 + ABIE53_004753 0.43 +0.4
957,536 + ABIE53_004753 0.43 +0.3
957,536 + ABIE53_004753 0.43 -0.4
957,536 + ABIE53_004753 0.43 -1.2
957,537 - ABIE53_004753 0.43 -1.2
957,537 - ABIE53_004753 0.43 +1.2
957,637 + ABIE53_004753 0.52 +0.5
957,684 - ABIE53_004753 0.56 +0.0
957,684 - ABIE53_004753 0.56 -0.2
957,692 + ABIE53_004753 0.57 -0.2
957,692 + ABIE53_004753 0.57 +1.0
957,693 - ABIE53_004753 0.57 +2.8
957,693 - ABIE53_004753 0.57 -0.8
957,763 + ABIE53_004753 0.64 +0.2
957,764 - ABIE53_004753 0.64 +0.8

Or see this region's nucleotide sequence