Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000221 and ABIE53_000222 overlap by 8 nucleotides ABIE53_000222 and ABIE53_000223 are separated by 959 nucleotides
ABIE53_000220: ABIE53_000220 - hypothetical protein, at 225,008 to 225,331
_000220
ABIE53_000221: ABIE53_000221 - hypothetical protein, at 225,315 to 226,325
_000221
ABIE53_000222: ABIE53_000222 - hypothetical protein, at 226,318 to 226,605
_000222
ABIE53_000223: ABIE53_000223 - hypothetical protein, at 227,565 to 227,804
_000223
Position (kb) 226
227 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 225.362 kb on + strand at 225.362 kb on + strand at 225.362 kb on + strand at 225.369 kb on - strand at 225.369 kb on - strand at 225.369 kb on - strand at 225.369 kb on - strand at 225.369 kb on - strand at 225.369 kb on - strand at 225.408 kb on - strand at 225.531 kb on - strand, within ABIE53_000221 at 225.572 kb on - strand, within ABIE53_000221 at 225.572 kb on - strand, within ABIE53_000221 at 225.579 kb on + strand, within ABIE53_000221 at 225.580 kb on - strand, within ABIE53_000221 at 225.580 kb on - strand, within ABIE53_000221 at 225.580 kb on - strand, within ABIE53_000221 at 225.580 kb on - strand, within ABIE53_000221 at 225.647 kb on - strand, within ABIE53_000221 at 225.691 kb on + strand, within ABIE53_000221 at 225.691 kb on + strand, within ABIE53_000221 at 225.692 kb on - strand, within ABIE53_000221 at 225.692 kb on - strand, within ABIE53_000221 at 225.692 kb on - strand, within ABIE53_000221 at 225.747 kb on + strand, within ABIE53_000221 at 225.858 kb on + strand, within ABIE53_000221 at 225.858 kb on + strand, within ABIE53_000221 at 225.859 kb on - strand, within ABIE53_000221 at 225.859 kb on - strand, within ABIE53_000221 at 225.859 kb on - strand, within ABIE53_000221 at 225.925 kb on + strand, within ABIE53_000221 at 225.925 kb on + strand, within ABIE53_000221 at 225.926 kb on - strand, within ABIE53_000221 at 225.926 kb on - strand, within ABIE53_000221 at 225.926 kb on - strand, within ABIE53_000221 at 225.926 kb on - strand, within ABIE53_000221 at 225.926 kb on - strand, within ABIE53_000221 at 225.970 kb on - strand, within ABIE53_000221 at 226.029 kb on + strand, within ABIE53_000221 at 226.080 kb on + strand, within ABIE53_000221 at 226.080 kb on + strand, within ABIE53_000221 at 226.080 kb on + strand, within ABIE53_000221 at 226.081 kb on - strand, within ABIE53_000221 at 226.081 kb on - strand, within ABIE53_000221 at 226.132 kb on + strand, within ABIE53_000221 at 226.132 kb on + strand, within ABIE53_000221 at 226.132 kb on + strand, within ABIE53_000221 at 226.132 kb on + strand, within ABIE53_000221 at 226.132 kb on + strand, within ABIE53_000221 at 226.133 kb on - strand, within ABIE53_000221 at 226.133 kb on - strand, within ABIE53_000221 at 226.143 kb on + strand, within ABIE53_000221 at 226.144 kb on - strand, within ABIE53_000221 at 226.257 kb on + strand at 226.257 kb on + strand at 226.258 kb on - strand at 226.276 kb on + strand at 226.276 kb on + strand at 226.276 kb on + strand at 226.276 kb on + strand at 226.277 kb on - strand at 226.277 kb on - strand at 226.281 kb on - strand at 226.320 kb on - strand at 226.351 kb on + strand, within ABIE53_000222 at 226.351 kb on + strand, within ABIE53_000222 at 226.352 kb on - strand, within ABIE53_000222 at 226.352 kb on - strand, within ABIE53_000222 at 226.352 kb on - strand, within ABIE53_000222 at 226.404 kb on + strand, within ABIE53_000222 at 226.483 kb on + strand, within ABIE53_000222 at 226.483 kb on + strand, within ABIE53_000222 at 226.483 kb on + strand, within ABIE53_000222 at 226.483 kb on + strand, within ABIE53_000222 at 226.483 kb on + strand, within ABIE53_000222 at 226.628 kb on + strand at 226.673 kb on + strand at 226.673 kb on + strand at 226.673 kb on + strand at 226.674 kb on - strand at 226.674 kb on - strand at 226.674 kb on - strand at 226.694 kb on + strand at 226.694 kb on + strand at 226.694 kb on + strand at 226.694 kb on + strand at 226.694 kb on + strand at 226.694 kb on + strand at 226.694 kb on + strand at 226.695 kb on - strand at 226.695 kb on - strand at 226.695 kb on - strand at 226.695 kb on - strand at 226.695 kb on - strand at 226.695 kb on - strand at 226.772 kb on - strand at 226.796 kb on + strand at 226.797 kb on - strand at 226.806 kb on + strand at 226.807 kb on - strand at 226.807 kb on - strand at 226.807 kb on - strand at 226.835 kb on + strand at 226.835 kb on + strand at 226.835 kb on + strand at 226.835 kb on + strand at 226.835 kb on + strand at 226.836 kb on - strand at 226.836 kb on - strand at 226.838 kb on + strand at 226.838 kb on + strand at 226.839 kb on - strand at 226.839 kb on - strand at 226.878 kb on + strand at 226.879 kb on - strand at 226.879 kb on - strand at 226.929 kb on + strand at 226.930 kb on - strand at 226.930 kb on - strand at 226.965 kb on + strand at 227.046 kb on + strand at 227.047 kb on - strand at 227.047 kb on - strand at 227.107 kb on + strand at 227.108 kb on - strand at 227.108 kb on - strand at 227.114 kb on + strand at 227.114 kb on + strand at 227.114 kb on + strand at 227.115 kb on - strand at 227.115 kb on - strand at 227.115 kb on - strand at 227.156 kb on - strand at 227.156 kb on - strand at 227.156 kb on - strand at 227.166 kb on - strand at 227.166 kb on - strand at 227.169 kb on + strand at 227.169 kb on + strand at 227.169 kb on + strand at 227.169 kb on + strand at 227.169 kb on + strand at 227.170 kb on - strand at 227.170 kb on - strand at 227.170 kb on - strand at 227.170 kb on - strand at 227.285 kb on + strand at 227.285 kb on + strand at 227.285 kb on + strand at 227.285 kb on + strand at 227.285 kb on + strand at 227.285 kb on + strand at 227.285 kb on + strand at 227.285 kb on + strand at 227.285 kb on + strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.286 kb on - strand at 227.333 kb on + strand at 227.333 kb on + strand at 227.334 kb on - strand at 227.334 kb on - strand at 227.371 kb on + strand at 227.371 kb on + strand at 227.372 kb on - strand at 227.372 kb on - strand at 227.416 kb on + strand at 227.417 kb on - strand at 227.417 kb on - strand at 227.460 kb on + strand at 227.460 kb on + strand at 227.461 kb on - strand at 227.468 kb on + strand at 227.468 kb on + strand at 227.468 kb on + strand at 227.468 kb on + strand at 227.468 kb on + strand at 227.469 kb on - strand at 227.469 kb on - strand at 227.514 kb on + strand at 227.515 kb on - strand at 227.559 kb on + strand at 227.559 kb on + strand at 227.559 kb on + strand at 227.559 kb on + strand at 227.560 kb on - strand at 227.560 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 225,362 + -0.0 225,362 + -1.0 225,362 + +0.1 225,369 - +0.1 225,369 - -0.9 225,369 - -0.8 225,369 - +1.0 225,369 - -2.0 225,369 - +0.5 225,408 - -1.2 225,531 - ABIE53_000221 0.21 +0.3 225,572 - ABIE53_000221 0.25 -0.3 225,572 - ABIE53_000221 0.25 -0.2 225,579 + ABIE53_000221 0.26 +1.0 225,580 - ABIE53_000221 0.26 +0.9 225,580 - ABIE53_000221 0.26 -0.6 225,580 - ABIE53_000221 0.26 +1.8 225,580 - ABIE53_000221 0.26 -0.7 225,647 - ABIE53_000221 0.33 +0.2 225,691 + ABIE53_000221 0.37 -0.8 225,691 + ABIE53_000221 0.37 +0.3 225,692 - ABIE53_000221 0.37 -0.4 225,692 - ABIE53_000221 0.37 +2.1 225,692 - ABIE53_000221 0.37 -1.0 225,747 + ABIE53_000221 0.43 +0.7 225,858 + ABIE53_000221 0.54 +0.5 225,858 + ABIE53_000221 0.54 -0.5 225,859 - ABIE53_000221 0.54 -0.9 225,859 - ABIE53_000221 0.54 -0.4 225,859 - ABIE53_000221 0.54 +1.0 225,925 + ABIE53_000221 0.60 -0.1 225,925 + ABIE53_000221 0.60 -0.4 225,926 - ABIE53_000221 0.60 -1.1 225,926 - ABIE53_000221 0.60 -0.5 225,926 - ABIE53_000221 0.60 +1.8 225,926 - ABIE53_000221 0.60 +1.0 225,926 - ABIE53_000221 0.60 -0.4 225,970 - ABIE53_000221 0.65 -0.8 226,029 + ABIE53_000221 0.71 -1.8 226,080 + ABIE53_000221 0.76 -1.5 226,080 + ABIE53_000221 0.76 -0.4 226,080 + ABIE53_000221 0.76 -1.0 226,081 - ABIE53_000221 0.76 -0.7 226,081 - ABIE53_000221 0.76 +2.3 226,132 + ABIE53_000221 0.81 -0.2 226,132 + ABIE53_000221 0.81 -1.5 226,132 + ABIE53_000221 0.81 -1.9 226,132 + ABIE53_000221 0.81 +1.3 226,132 + ABIE53_000221 0.81 +1.0 226,133 - ABIE53_000221 0.81 -0.3 226,133 - ABIE53_000221 0.81 -0.4 226,143 + ABIE53_000221 0.82 +1.9 226,144 - ABIE53_000221 0.82 -1.2 226,257 + +1.0 226,257 + -0.4 226,258 - -1.5 226,276 + -0.9 226,276 + -0.4 226,276 + -1.2 226,276 + +0.1 226,277 - -1.7 226,277 - -1.3 226,281 - -0.5 226,320 - +0.5 226,351 + ABIE53_000222 0.11 -0.6 226,351 + ABIE53_000222 0.11 -0.3 226,352 - ABIE53_000222 0.12 -0.9 226,352 - ABIE53_000222 0.12 -0.2 226,352 - ABIE53_000222 0.12 -2.2 226,404 + ABIE53_000222 0.30 -0.0 226,483 + ABIE53_000222 0.57 -0.9 226,483 + ABIE53_000222 0.57 -1.1 226,483 + ABIE53_000222 0.57 +0.7 226,483 + ABIE53_000222 0.57 -1.5 226,483 + ABIE53_000222 0.57 -0.2 226,628 + -1.9 226,673 + -1.3 226,673 + +0.7 226,673 + -0.8 226,674 - -0.9 226,674 - +2.2 226,674 - -1.2 226,694 + +0.1 226,694 + -0.4 226,694 + +2.9 226,694 + -0.9 226,694 + -0.5 226,694 + -0.7 226,694 + +0.5 226,695 - +1.0 226,695 - -1.2 226,695 - +0.4 226,695 - +0.7 226,695 - +0.4 226,695 - -0.2 226,772 - +1.3 226,796 + -1.2 226,797 - -1.2 226,806 + +0.1 226,807 - +0.6 226,807 - -1.5 226,807 - -0.8 226,835 + -1.9 226,835 + +0.4 226,835 + +0.1 226,835 + -0.1 226,835 + -1.2 226,836 - -0.2 226,836 - +0.1 226,838 + -1.0 226,838 + +0.1 226,839 - +1.0 226,839 - -0.1 226,878 + -1.1 226,879 - -0.3 226,879 - -0.3 226,929 + -1.0 226,930 - +1.7 226,930 - -0.6 226,965 + -0.1 227,046 + -1.4 227,047 - -0.4 227,047 - -1.5 227,107 + -0.5 227,108 - -1.6 227,108 - -0.9 227,114 + -1.7 227,114 + -0.7 227,114 + +0.1 227,115 - +0.3 227,115 - -0.5 227,115 - +0.1 227,156 - +0.2 227,156 - -1.8 227,156 - +1.5 227,166 - -0.7 227,166 - -0.4 227,169 + -1.6 227,169 + +0.2 227,169 + -0.8 227,169 + -1.4 227,169 + -0.0 227,170 - +0.8 227,170 - +0.3 227,170 - -0.9 227,170 - -1.4 227,285 + -1.1 227,285 + -0.3 227,285 + -0.6 227,285 + -0.5 227,285 + -0.5 227,285 + -0.9 227,285 + -0.2 227,285 + +3.3 227,285 + -0.8 227,286 - +1.0 227,286 - -2.2 227,286 - -0.7 227,286 - +1.3 227,286 - +0.0 227,286 - -0.3 227,286 - -0.6 227,286 - +0.3 227,286 - +0.1 227,286 - -1.5 227,333 + +4.0 227,333 + -0.5 227,334 - -0.9 227,334 - -1.8 227,371 + -1.1 227,371 + +1.3 227,372 - -0.6 227,372 - +0.7 227,416 + -1.8 227,417 - +0.1 227,417 - -0.8 227,460 + -0.8 227,460 + +0.3 227,461 - +1.3 227,468 + +1.1 227,468 + -0.2 227,468 + -0.7 227,468 + -2.2 227,468 + -1.3 227,469 - -1.3 227,469 - +0.7 227,514 + -0.6 227,515 - -0.3 227,559 + -1.0 227,559 + -0.3 227,559 + -0.1 227,559 + +1.7 227,560 - -1.0 227,560 - -0.6
Or see this region's nucleotide sequence