Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3137

Experiment: MoYLS4 with Chloride 125 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_3136 and DvMF_3137 are separated by 253 nucleotidesDvMF_3137 and DvMF_3138 overlap by 4 nucleotidesDvMF_3138 and DvMF_3139 are separated by 6 nucleotides DvMF_3136: DvMF_3136 - lipopolysaccharide heptosyltransferase II (RefSeq), at 3,955,868 to 3,956,902 _3136 DvMF_3137: DvMF_3137 - ABC transporter related (RefSeq), at 3,957,156 to 3,957,989 _3137 DvMF_3138: DvMF_3138 - cobalt ABC transporter, inner membrane subunit CbiQ (RefSeq), at 3,957,986 to 3,958,783 _3138 DvMF_3139: DvMF_3139 - cobalt transport protein CbiM (RefSeq), at 3,958,790 to 3,959,404 _3139 Position (kb) 3957 3958Strain fitness (log2 ratio) -1 0 1at 3957.020 kb on + strandat 3957.039 kb on - strandat 3957.171 kb on - strandat 3957.243 kb on - strand, within DvMF_3137at 3957.308 kb on + strand, within DvMF_3137at 3957.384 kb on + strand, within DvMF_3137at 3957.384 kb on + strand, within DvMF_3137at 3957.663 kb on + strand, within DvMF_3137at 3957.837 kb on + strand, within DvMF_3137at 3958.045 kb on + strandat 3958.045 kb on + strandat 3958.053 kb on - strandat 3958.139 kb on - strand, within DvMF_3138at 3958.363 kb on - strand, within DvMF_3138at 3958.832 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloride 125 mM
remove
3,957,020 + -0.3
3,957,039 - -0.2
3,957,171 - -0.6
3,957,243 - DvMF_3137 0.10 -0.6
3,957,308 + DvMF_3137 0.18 -1.4
3,957,384 + DvMF_3137 0.27 -0.9
3,957,384 + DvMF_3137 0.27 -0.5
3,957,663 + DvMF_3137 0.61 -0.8
3,957,837 + DvMF_3137 0.82 -1.4
3,958,045 + -0.5
3,958,045 + +0.6
3,958,053 - -0.3
3,958,139 - DvMF_3138 0.19 -1.4
3,958,363 - DvMF_3138 0.47 -1.0
3,958,832 + -0.4

Or see this region's nucleotide sequence