Experiment: MoYLS4 with Chloride 125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3126 and DvMF_3127 are separated by 360 nucleotides DvMF_3127 and DvMF_3128 overlap by 11 nucleotides DvMF_3128 and DvMF_3129 are separated by 29 nucleotides DvMF_3129 and DvMF_3130 are separated by 83 nucleotides
DvMF_3126: DvMF_3126 - inosine-5'-monophosphate dehydrogenase (RefSeq), at 3,946,094 to 3,947,554
_3126
DvMF_3127: DvMF_3127 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 3,947,915 to 3,948,535
_3127
DvMF_3128: DvMF_3128 - hypothetical protein (RefSeq), at 3,948,525 to 3,948,665
_3128
DvMF_3129: DvMF_3129 - cytochrome c assembly protein (RefSeq), at 3,948,695 to 3,949,381
_3129
DvMF_3130: DvMF_3130 - cytochrome c-type biogenesis protein CcmB (RefSeq), at 3,949,465 to 3,950,142
_3130
Position (kb)
3947
3948
3949 Strain fitness (log2 ratio)
-1
0
1 at 3947.774 kb on + strand at 3947.784 kb on + strand at 3947.922 kb on + strand at 3948.021 kb on + strand, within DvMF_3127 at 3948.029 kb on - strand, within DvMF_3127 at 3948.029 kb on - strand, within DvMF_3127 at 3948.132 kb on - strand, within DvMF_3127 at 3948.280 kb on - strand, within DvMF_3127 at 3948.285 kb on - strand, within DvMF_3127 at 3948.350 kb on + strand, within DvMF_3127 at 3948.377 kb on - strand, within DvMF_3127 at 3948.428 kb on + strand, within DvMF_3127 at 3948.460 kb on + strand, within DvMF_3127 at 3949.462 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Chloride 125 mM remove 3,947,774 + -0.2 3,947,784 + -0.1 3,947,922 + -0.1 3,948,021 + DvMF_3127 0.17 -0.2 3,948,029 - DvMF_3127 0.18 -0.4 3,948,029 - DvMF_3127 0.18 -0.3 3,948,132 - DvMF_3127 0.35 -0.5 3,948,280 - DvMF_3127 0.59 -1.0 3,948,285 - DvMF_3127 0.60 +0.1 3,948,350 + DvMF_3127 0.70 -1.4 3,948,377 - DvMF_3127 0.74 -0.5 3,948,428 + DvMF_3127 0.83 +0.4 3,948,460 + DvMF_3127 0.88 -0.4 3,949,462 + -0.0
Or see this region's nucleotide sequence