Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2753

Experiment: MoYLS4 with Chloride 125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2751 and DvMF_2752 overlap by 4 nucleotidesDvMF_2752 and DvMF_2753 overlap by 4 nucleotidesDvMF_2753 and DvMF_2754 are separated by 276 nucleotides DvMF_2751: DvMF_2751 - inner-membrane translocator (RefSeq), at 3,476,605 to 3,477,510 _2751 DvMF_2752: DvMF_2752 - inner-membrane translocator (RefSeq), at 3,477,507 to 3,478,499 _2752 DvMF_2753: DvMF_2753 - ABC transporter related (RefSeq), at 3,478,496 to 3,479,263 _2753 DvMF_2754: DvMF_2754 - ABC transporter related (RefSeq), at 3,479,540 to 3,480,256 _2754 Position (kb) 3478 3479 3480Strain fitness (log2 ratio) -1 0 1at 3477.719 kb on + strand, within DvMF_2752at 3477.997 kb on - strand, within DvMF_2752at 3478.002 kb on - strand, within DvMF_2752at 3478.009 kb on + strand, within DvMF_2752at 3478.132 kb on - strand, within DvMF_2752at 3478.236 kb on - strand, within DvMF_2752at 3478.272 kb on - strand, within DvMF_2752at 3478.351 kb on + strand, within DvMF_2752at 3478.351 kb on + strand, within DvMF_2752at 3478.856 kb on - strand, within DvMF_2753at 3478.921 kb on - strand, within DvMF_2753at 3479.065 kb on + strand, within DvMF_2753at 3479.227 kb on + strandat 3479.313 kb on - strandat 3479.570 kb on + strandat 3479.578 kb on - strandat 3479.588 kb on + strandat 3479.596 kb on - strandat 3479.657 kb on + strand, within DvMF_2754at 3479.696 kb on - strand, within DvMF_2754at 3479.719 kb on + strand, within DvMF_2754at 3480.006 kb on - strand, within DvMF_2754

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloride 125 mM
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3,477,719 + DvMF_2752 0.21 +0.1
3,477,997 - DvMF_2752 0.49 +0.0
3,478,002 - DvMF_2752 0.50 -0.0
3,478,009 + DvMF_2752 0.51 +0.2
3,478,132 - DvMF_2752 0.63 -0.1
3,478,236 - DvMF_2752 0.73 -0.1
3,478,272 - DvMF_2752 0.77 +0.2
3,478,351 + DvMF_2752 0.85 -0.0
3,478,351 + DvMF_2752 0.85 -0.0
3,478,856 - DvMF_2753 0.47 +0.0
3,478,921 - DvMF_2753 0.55 +1.4
3,479,065 + DvMF_2753 0.74 -0.0
3,479,227 + -0.1
3,479,313 - +0.4
3,479,570 + -0.4
3,479,578 - +0.2
3,479,588 + -0.3
3,479,596 - -0.2
3,479,657 + DvMF_2754 0.16 -0.1
3,479,696 - DvMF_2754 0.22 +0.1
3,479,719 + DvMF_2754 0.25 +0.0
3,480,006 - DvMF_2754 0.65 -0.2

Or see this region's nucleotide sequence