Experiment: MoYLS4 with Chloride 125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0389 and DvMF_0390 are separated by 267 nucleotides DvMF_0390 and DvMF_0391 are separated by 311 nucleotides
DvMF_0389: DvMF_0389 - Beta-lactamase (RefSeq), at 457,193 to 458,038
_0389
DvMF_0390: DvMF_0390 - hypothetical protein (RefSeq), at 458,306 to 459,697
_0390
DvMF_0391: DvMF_0391 - Carbonate dehydratase (RefSeq), at 460,009 to 460,665
_0391
Position (kb) 458
459
460 Strain fitness (log2 ratio) -2
-1
0
1 at 457.309 kb on + strand, within DvMF_0389 at 457.400 kb on + strand, within DvMF_0389 at 457.458 kb on + strand, within DvMF_0389 at 457.472 kb on - strand, within DvMF_0389 at 457.534 kb on - strand, within DvMF_0389 at 457.661 kb on - strand, within DvMF_0389 at 458.167 kb on + strand at 458.417 kb on - strand at 458.667 kb on + strand, within DvMF_0390 at 458.675 kb on - strand, within DvMF_0390 at 458.834 kb on - strand, within DvMF_0390 at 458.881 kb on + strand, within DvMF_0390 at 458.898 kb on + strand, within DvMF_0390 at 459.116 kb on - strand, within DvMF_0390 at 459.200 kb on + strand, within DvMF_0390 at 459.216 kb on + strand, within DvMF_0390 at 459.224 kb on - strand, within DvMF_0390 at 459.231 kb on + strand, within DvMF_0390 at 459.231 kb on + strand, within DvMF_0390 at 459.231 kb on + strand, within DvMF_0390 at 459.356 kb on + strand, within DvMF_0390 at 459.502 kb on + strand, within DvMF_0390 at 459.857 kb on - strand at 459.950 kb on - strand at 460.026 kb on + strand at 460.060 kb on + strand at 460.382 kb on - strand, within DvMF_0391 at 460.688 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Chloride 125 mM remove 457,309 + DvMF_0389 0.14 -0.9 457,400 + DvMF_0389 0.24 -0.3 457,458 + DvMF_0389 0.31 -0.2 457,472 - DvMF_0389 0.33 +0.4 457,534 - DvMF_0389 0.40 -1.1 457,661 - DvMF_0389 0.55 -0.4 458,167 + -0.3 458,417 - +0.3 458,667 + DvMF_0390 0.26 -0.5 458,675 - DvMF_0390 0.27 +0.3 458,834 - DvMF_0390 0.38 +0.3 458,881 + DvMF_0390 0.41 +0.4 458,898 + DvMF_0390 0.43 +0.6 459,116 - DvMF_0390 0.58 +0.8 459,200 + DvMF_0390 0.64 +0.3 459,216 + DvMF_0390 0.65 -0.1 459,224 - DvMF_0390 0.66 +0.2 459,231 + DvMF_0390 0.66 +0.5 459,231 + DvMF_0390 0.66 -1.8 459,231 + DvMF_0390 0.66 +0.3 459,356 + DvMF_0390 0.75 +0.5 459,502 + DvMF_0390 0.86 +0.2 459,857 - -0.2 459,950 - -0.3 460,026 + -0.2 460,060 + -0.1 460,382 - DvMF_0391 0.57 -0.2 460,688 - -1.0
Or see this region's nucleotide sequence