Experiment: MoYLS4 with Chloride 125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0251 and DvMF_0252 are separated by 121 nucleotides DvMF_0252 and DvMF_0253 overlap by 52 nucleotides DvMF_0253 and DvMF_0254 are separated by 11 nucleotides
DvMF_0251: DvMF_0251 - protein of unknown function DUF342 (RefSeq), at 287,292 to 288,437
_0251
DvMF_0252: DvMF_0252 - anti-sigma-factor antagonist (RefSeq), at 288,559 to 288,903
_0252
DvMF_0253: DvMF_0253 - putative signal transduction histidine kinase (RefSeq), at 288,852 to 289,313
_0253
DvMF_0254: DvMF_0254 - response regulator receiver modulated serine phosphatase (RefSeq), at 289,325 to 290,917
_0254
Position (kb) 288
289 Strain fitness (log2 ratio) -1
0
1 at 287.712 kb on - strand, within DvMF_0251 at 287.764 kb on + strand, within DvMF_0251 at 287.772 kb on - strand, within DvMF_0251 at 287.904 kb on - strand, within DvMF_0251 at 288.656 kb on - strand, within DvMF_0252 at 288.900 kb on + strand at 288.970 kb on + strand, within DvMF_0253 at 289.111 kb on - strand, within DvMF_0253 at 289.201 kb on - strand, within DvMF_0253 at 289.211 kb on + strand, within DvMF_0253 at 289.381 kb on + strand at 289.424 kb on + strand at 289.635 kb on - strand, within DvMF_0254 at 289.693 kb on - strand, within DvMF_0254 at 289.741 kb on + strand, within DvMF_0254 at 289.758 kb on + strand, within DvMF_0254
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Chloride 125 mM remove 287,712 - DvMF_0251 0.37 -0.7 287,764 + DvMF_0251 0.41 -0.6 287,772 - DvMF_0251 0.42 -0.8 287,904 - DvMF_0251 0.53 -0.2 288,656 - DvMF_0252 0.28 +0.4 288,900 + -0.3 288,970 + DvMF_0253 0.26 -0.2 289,111 - DvMF_0253 0.56 -0.6 289,201 - DvMF_0253 0.76 -0.1 289,211 + DvMF_0253 0.78 -0.3 289,381 + -0.4 289,424 + -0.2 289,635 - DvMF_0254 0.19 -0.8 289,693 - DvMF_0254 0.23 +0.1 289,741 + DvMF_0254 0.26 -0.0 289,758 + DvMF_0254 0.27 -0.4
Or see this region's nucleotide sequence