Experiment: MoYLS4 with Chloride 125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0008 and DvMF_0009 are separated by 205 nucleotides DvMF_0009 and DvMF_0010 are separated by 164 nucleotides
DvMF_0008: DvMF_0008 - transcriptional regulator, TraR/DksA family (RefSeq), at 10,369 to 10,731
_0008
DvMF_0009: DvMF_0009 - protein of unknown function DUF814 (RefSeq), at 10,937 to 12,919
_0009
DvMF_0010: DvMF_0010 - diguanylate phosphodiesterase (RefSeq), at 13,084 to 14,547
_0010
Position (kb) 10
11
12
13 Strain fitness (log2 ratio) -1
0
1 at 10.109 kb on + strand at 10.951 kb on + strand at 11.107 kb on + strand at 11.337 kb on + strand, within DvMF_0009 at 11.371 kb on - strand, within DvMF_0009 at 11.413 kb on - strand, within DvMF_0009 at 11.788 kb on + strand, within DvMF_0009 at 11.788 kb on + strand, within DvMF_0009 at 12.245 kb on - strand, within DvMF_0009 at 12.287 kb on + strand, within DvMF_0009 at 12.414 kb on + strand, within DvMF_0009 at 12.497 kb on - strand, within DvMF_0009 at 12.641 kb on - strand, within DvMF_0009 at 12.716 kb on - strand, within DvMF_0009 at 12.822 kb on + strand at 12.839 kb on + strand at 12.908 kb on + strand at 13.217 kb on + strand at 13.288 kb on - strand, within DvMF_0010 at 13.396 kb on + strand, within DvMF_0010 at 13.419 kb on - strand, within DvMF_0010 at 13.581 kb on - strand, within DvMF_0010 at 13.585 kb on - strand, within DvMF_0010 at 13.762 kb on - strand, within DvMF_0010 at 13.771 kb on + strand, within DvMF_0010 at 13.819 kb on - strand, within DvMF_0010 at 13.819 kb on - strand, within DvMF_0010
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Chloride 125 mM remove 10,109 + +0.0 10,951 + -0.4 11,107 + -0.2 11,337 + DvMF_0009 0.20 -0.8 11,371 - DvMF_0009 0.22 -0.4 11,413 - DvMF_0009 0.24 -0.6 11,788 + DvMF_0009 0.43 +0.1 11,788 + DvMF_0009 0.43 -0.4 12,245 - DvMF_0009 0.66 -1.1 12,287 + DvMF_0009 0.68 -0.1 12,414 + DvMF_0009 0.74 -0.6 12,497 - DvMF_0009 0.79 -0.3 12,641 - DvMF_0009 0.86 -1.6 12,716 - DvMF_0009 0.90 -0.4 12,822 + -1.1 12,839 + -0.1 12,908 + +0.0 13,217 + +0.8 13,288 - DvMF_0010 0.14 +0.6 13,396 + DvMF_0010 0.21 +0.8 13,419 - DvMF_0010 0.23 +1.4 13,581 - DvMF_0010 0.34 +0.9 13,585 - DvMF_0010 0.34 +0.8 13,762 - DvMF_0010 0.46 +0.9 13,771 + DvMF_0010 0.47 +0.7 13,819 - DvMF_0010 0.50 +0.7 13,819 - DvMF_0010 0.50 +0.6
Or see this region's nucleotide sequence