Experiment: MoYLS4 with Chloride 125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0006 and DvMF_R0001 are separated by 405 nucleotides DvMF_R0001 and DvMF_0007 are separated by 316 nucleotides DvMF_0007 and DvMF_R0002 are separated by 71 nucleotides DvMF_R0002 and DvMF_R0003 are separated by 57 nucleotides DvMF_R0003 and DvMF_R0004 are separated by 8 nucleotides DvMF_R0004 and DvMF_R0005 are separated by 13 nucleotides DvMF_R0005 and DvMF_0008 are separated by 475 nucleotides
DvMF_0006: DvMF_0006 - hypothetical protein (RefSeq), at 7,599 to 8,240
_0006
DvMF_R0001: DvMF_R0001 - tRNA-Gly (RefSeq), at 8,646 to 8,720
_R0001
DvMF_0007: DvMF_0007 - protein of unknown function DUF302 (RefSeq), at 9,037 to 9,444
_0007
DvMF_R0002: DvMF_R0002 - tRNA-Gly (RefSeq), at 9,516 to 9,590
_R0002
DvMF_R0003: DvMF_R0003 - tRNA-Gly (RefSeq), at 9,648 to 9,722
_R0003
DvMF_R0004: DvMF_R0004 - tRNA-Cys (RefSeq), at 9,731 to 9,805
_R0004
DvMF_R0005: DvMF_R0005 - tRNA-Gly (RefSeq), at 9,819 to 9,893
_R0005
DvMF_0008: DvMF_0008 - transcriptional regulator, TraR/DksA family (RefSeq), at 10,369 to 10,731
_0008
Position (kb)
9
10 Strain fitness (log2 ratio)
-1
0
1 at 8.083 kb on - strand, within DvMF_0006 at 8.096 kb on + strand, within DvMF_0006 at 8.254 kb on - strand at 8.339 kb on - strand at 8.505 kb on + strand at 8.633 kb on - strand at 8.683 kb on - strand, within DvMF_R0001 at 8.966 kb on - strand at 8.993 kb on - strand at 9.136 kb on - strand, within DvMF_0007 at 9.189 kb on + strand, within DvMF_0007 at 9.241 kb on + strand, within DvMF_0007 at 9.268 kb on + strand, within DvMF_0007 at 9.268 kb on + strand, within DvMF_0007 at 9.362 kb on + strand, within DvMF_0007 at 9.399 kb on - strand, within DvMF_0007 at 9.412 kb on + strand at 9.553 kb on - strand, within DvMF_R0002 at 9.702 kb on + strand, within DvMF_R0003 at 10.109 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Chloride 125 mM remove 8,083 - DvMF_0006 0.75 +0.2 8,096 + DvMF_0006 0.77 -0.5 8,254 - -0.5 8,339 - -0.3 8,505 + -1.0 8,633 - +0.1 8,683 - DvMF_R0001 0.49 -0.6 8,966 - -0.6 8,993 - -0.9 9,136 - DvMF_0007 0.24 -0.6 9,189 + DvMF_0007 0.37 -1.2 9,241 + DvMF_0007 0.50 -0.2 9,268 + DvMF_0007 0.57 -0.4 9,268 + DvMF_0007 0.57 -0.3 9,362 + DvMF_0007 0.80 +0.0 9,399 - DvMF_0007 0.89 -0.7 9,412 + -0.7 9,553 - DvMF_R0002 0.49 -0.3 9,702 + DvMF_R0003 0.72 -0.4 10,109 + +0.0
Or see this region's nucleotide sequence