Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3786 and mogA are separated by 70 nucleotides mogA and Shew_3788 are separated by 175 nucleotides Shew_3788 and Shew_3789 are separated by 3 nucleotides Shew_3789 and Shew_3790 are separated by 13 nucleotides
Shew_3786: Shew_3786 - hypothetical protein (RefSeq), at 4,504,608 to 4,504,787
_3786
Shew_3787: mogA - molybdenum cofactor biosynthesis protein (RefSeq), at 4,504,858 to 4,505,391
mogA
Shew_3788: Shew_3788 - multi-sensor hybrid histidine kinase (RefSeq), at 4,505,567 to 4,508,695
_3788
Shew_3789: Shew_3789 - ABC-type nitrate/sulfonate/bicarbonate transport system protein (RefSeq), at 4,508,699 to 4,509,661
_3789
Shew_3790: Shew_3790 - response regulator receiver modulated diguanylate cyclase (RefSeq), at 4,509,675 to 4,510,577
_3790
Position (kb) 4505
4506
4507
4508
4509 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12 at 4504.607 kb on + strand at 4504.621 kb on + strand at 4504.700 kb on - strand, within Shew_3786 at 4504.879 kb on - strand at 4504.879 kb on - strand at 4505.133 kb on + strand, within mogA at 4505.141 kb on - strand, within mogA at 4505.231 kb on + strand, within mogA at 4505.488 kb on + strand at 4505.621 kb on + strand at 4505.746 kb on - strand at 4505.771 kb on - strand at 4506.063 kb on - strand, within Shew_3788 at 4506.105 kb on + strand, within Shew_3788 at 4506.105 kb on + strand, within Shew_3788 at 4506.105 kb on + strand, within Shew_3788 at 4506.246 kb on - strand, within Shew_3788 at 4506.457 kb on + strand, within Shew_3788 at 4506.567 kb on - strand, within Shew_3788 at 4506.604 kb on + strand, within Shew_3788 at 4506.633 kb on - strand, within Shew_3788 at 4506.719 kb on + strand, within Shew_3788 at 4506.813 kb on - strand, within Shew_3788 at 4506.840 kb on + strand, within Shew_3788 at 4506.903 kb on - strand, within Shew_3788 at 4506.951 kb on - strand, within Shew_3788 at 4507.073 kb on - strand, within Shew_3788 at 4507.354 kb on + strand, within Shew_3788 at 4507.703 kb on - strand, within Shew_3788 at 4507.948 kb on + strand, within Shew_3788 at 4508.075 kb on + strand, within Shew_3788 at 4508.100 kb on - strand, within Shew_3788 at 4508.321 kb on - strand, within Shew_3788 at 4508.455 kb on - strand at 4508.561 kb on - strand at 4508.655 kb on + strand at 4508.655 kb on + strand at 4508.663 kb on - strand at 4508.673 kb on - strand at 4508.775 kb on - strand at 4508.846 kb on - strand, within Shew_3789 at 4508.846 kb on - strand, within Shew_3789 at 4508.940 kb on + strand, within Shew_3789 at 4508.945 kb on + strand, within Shew_3789 at 4508.963 kb on + strand, within Shew_3789 at 4509.029 kb on + strand, within Shew_3789 at 4509.048 kb on - strand, within Shew_3789 at 4509.105 kb on - strand, within Shew_3789 at 4509.143 kb on + strand, within Shew_3789 at 4509.244 kb on + strand, within Shew_3789 at 4509.382 kb on - strand, within Shew_3789 at 4509.538 kb on + strand, within Shew_3789 at 4509.595 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 4,504,607 + -0.1 4,504,621 + +0.3 4,504,700 - Shew_3786 0.51 -0.6 4,504,879 - -1.7 4,504,879 - -0.6 4,505,133 + mogA Shew_3787 0.51 +0.1 4,505,141 - mogA Shew_3787 0.53 -0.5 4,505,231 + mogA Shew_3787 0.70 -0.3 4,505,488 + +1.0 4,505,621 + -0.5 4,505,746 - -0.9 4,505,771 - -1.0 4,506,063 - Shew_3788 0.16 +0.1 4,506,105 + Shew_3788 0.17 +0.1 4,506,105 + Shew_3788 0.17 -0.3 4,506,105 + Shew_3788 0.17 -0.6 4,506,246 - Shew_3788 0.22 +0.9 4,506,457 + Shew_3788 0.28 +0.1 4,506,567 - Shew_3788 0.32 +0.3 4,506,604 + Shew_3788 0.33 -0.5 4,506,633 - Shew_3788 0.34 +0.4 4,506,719 + Shew_3788 0.37 -0.1 4,506,813 - Shew_3788 0.40 -0.2 4,506,840 + Shew_3788 0.41 +0.2 4,506,903 - Shew_3788 0.43 -1.4 4,506,951 - Shew_3788 0.44 -0.8 4,507,073 - Shew_3788 0.48 -0.4 4,507,354 + Shew_3788 0.57 -1.5 4,507,703 - Shew_3788 0.68 -1.2 4,507,948 + Shew_3788 0.76 -0.9 4,508,075 + Shew_3788 0.80 -0.5 4,508,100 - Shew_3788 0.81 -0.6 4,508,321 - Shew_3788 0.88 -2.0 4,508,455 - -1.0 4,508,561 - +0.5 4,508,655 + +0.7 4,508,655 + +1.1 4,508,663 - +0.2 4,508,673 - -1.5 4,508,775 - -0.9 4,508,846 - Shew_3789 0.15 +0.4 4,508,846 - Shew_3789 0.15 +0.2 4,508,940 + Shew_3789 0.25 -0.8 4,508,945 + Shew_3789 0.26 +12.7 4,508,963 + Shew_3789 0.27 -0.0 4,509,029 + Shew_3789 0.34 -0.2 4,509,048 - Shew_3789 0.36 -1.0 4,509,105 - Shew_3789 0.42 -2.0 4,509,143 + Shew_3789 0.46 -0.6 4,509,244 + Shew_3789 0.57 +0.1 4,509,382 - Shew_3789 0.71 +0.0 4,509,538 + Shew_3789 0.87 -2.2 4,509,595 + -0.6
Or see this region's nucleotide sequence