Strain Fitness in Shewanella loihica PV-4 around Shew_2550

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2548 and Shew_2549 are separated by 5 nucleotidesShew_2549 and Shew_2550 are separated by 230 nucleotidesShew_2550 and Shew_2551 overlap by 8 nucleotides Shew_2548: Shew_2548 - potassium efflux system protein (RefSeq), at 3,004,857 to 3,006,845 _2548 Shew_2549: Shew_2549 - NAD(P)H dehydrogenase (quinone) (RefSeq), at 3,006,851 to 3,007,468 _2549 Shew_2550: Shew_2550 - GCN5-related N-acetyltransferase (RefSeq), at 3,007,699 to 3,008,244 _2550 Shew_2551: Shew_2551 - homoserine O-succinyltransferase (RefSeq), at 3,008,237 to 3,009,202 _2551 Position (kb) 3007 3008 3009Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3006.936 kb on + strand, within Shew_2549at 3007.225 kb on + strand, within Shew_2549at 3008.726 kb on - strand, within Shew_2551at 3008.795 kb on + strand, within Shew_2551at 3008.806 kb on + strand, within Shew_2551at 3008.847 kb on - strand, within Shew_2551at 3009.230 kb on - strandat 3009.241 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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3,006,936 + Shew_2549 0.14 -0.9
3,007,225 + Shew_2549 0.61 -2.7
3,008,726 - Shew_2551 0.51 -0.9
3,008,795 + Shew_2551 0.58 -0.9
3,008,806 + Shew_2551 0.59 -5.1
3,008,847 - Shew_2551 0.63 -3.6
3,009,230 - -4.1
3,009,241 - +1.9

Or see this region's nucleotide sequence