Strain Fitness in Shewanella loihica PV-4 around Shew_2320

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2319 and Shew_2320 are separated by 4 nucleotidesShew_2320 and Shew_2321 are separated by 157 nucleotides Shew_2319: Shew_2319 - serine O-acetyltransferase (RefSeq), at 2,714,471 to 2,715,292 _2319 Shew_2320: Shew_2320 - RNA methyltransferase (RefSeq), at 2,715,297 to 2,716,055 _2320 Shew_2321: Shew_2321 - inositol monophosphatase (RefSeq), at 2,716,213 to 2,717,016 _2321 Position (kb) 2715 2716 2717Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2714.336 kb on + strandat 2715.767 kb on - strand, within Shew_2320at 2716.113 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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2,714,336 + -1.5
2,715,767 - Shew_2320 0.62 -4.8
2,716,113 - -4.6

Or see this region's nucleotide sequence