Strain Fitness in Shewanella loihica PV-4 around Shew_2211

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2210 and Shew_2211 are separated by 275 nucleotidesShew_2211 and Shew_2212 are separated by 829 nucleotides Shew_2210: Shew_2210 - proprotein convertase, P (RefSeq), at 2,576,535 to 2,577,746 _2210 Shew_2211: Shew_2211 - phosphoribosylaminoimidazole-succinocarboxamidesynthase (RefSeq), at 2,578,022 to 2,579,128 _2211 Shew_2212: Shew_2212 - peptidyl-dipeptidase Dcp (RefSeq), at 2,579,958 to 2,582,120 _2212 Position (kb) 2578 2579 2580Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2577.203 kb on + strand, within Shew_2210at 2578.217 kb on + strand, within Shew_2211at 2578.950 kb on - strand, within Shew_2211at 2579.008 kb on + strand, within Shew_2211at 2579.782 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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2,577,203 + Shew_2210 0.55 -1.8
2,578,217 + Shew_2211 0.18 -5.8
2,578,950 - Shew_2211 0.84 -1.8
2,579,008 + Shew_2211 0.89 -3.9
2,579,782 - -0.7

Or see this region's nucleotide sequence