Strain Fitness in Shewanella loihica PV-4 around Shew_2074

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2073 and Shew_2074 are separated by 58 nucleotides Shew_2073: Shew_2073 - lactoylglutathione lyase (RefSeq), at 2,395,525 to 2,395,935 _2073 Shew_2074: Shew_2074 - TonB-dependent receptor (RefSeq), at 2,395,994 to 2,398,504 _2074 Position (kb) 2395 2396 2397 2398 2399Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2395.372 kb on - strandat 2395.645 kb on + strand, within Shew_2073at 2396.651 kb on + strand, within Shew_2074at 2397.305 kb on + strand, within Shew_2074at 2397.317 kb on + strand, within Shew_2074at 2398.099 kb on - strand, within Shew_2074at 2398.161 kb on - strand, within Shew_2074at 2398.384 kb on + strandat 2399.479 kb on + strandat 2399.484 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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2,395,372 - +0.2
2,395,645 + Shew_2073 0.29 -0.0
2,396,651 + Shew_2074 0.26 -0.4
2,397,305 + Shew_2074 0.52 -4.6
2,397,317 + Shew_2074 0.53 -4.0
2,398,099 - Shew_2074 0.84 -2.6
2,398,161 - Shew_2074 0.86 +0.1
2,398,384 + -2.7
2,399,479 + +0.6
2,399,484 + +2.2

Or see this region's nucleotide sequence