Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1635 and Shew_1636 are separated by 332 nucleotides Shew_1636 and Shew_1637 are separated by 31 nucleotides Shew_1637 and Shew_1638 are separated by 33 nucleotides
Shew_1635: Shew_1635 - diguanylate cyclase (RefSeq), at 1,870,343 to 1,871,698
_1635
Shew_1636: Shew_1636 - hypothetical protein (RefSeq), at 1,872,031 to 1,872,537
_1636
Shew_1637: Shew_1637 - DNA internalization-related competence protein ComEC/Rec2 (RefSeq), at 1,872,569 to 1,874,854
_1637
Shew_1638: Shew_1638 - lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (RefSeq), at 1,874,888 to 1,876,702
_1638
Position (kb) 1872
1873
1874
1875 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1873.123 kb on - strand, within Shew_1637 at 1873.389 kb on + strand, within Shew_1637 at 1873.397 kb on - strand, within Shew_1637 at 1873.559 kb on - strand, within Shew_1637 at 1873.982 kb on - strand, within Shew_1637 at 1874.029 kb on + strand, within Shew_1637 at 1874.462 kb on + strand, within Shew_1637
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 1,873,123 - Shew_1637 0.24 -1.6 1,873,389 + Shew_1637 0.36 -1.1 1,873,397 - Shew_1637 0.36 -0.8 1,873,559 - Shew_1637 0.43 -1.2 1,873,982 - Shew_1637 0.62 -0.5 1,874,029 + Shew_1637 0.64 -1.0 1,874,462 + Shew_1637 0.83 -3.3
Or see this region's nucleotide sequence