Strain Fitness in Shewanella loihica PV-4 around Shew_1370

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfliI and Shew_1370 are separated by 29 nucleotidesShew_1370 and Shew_1371 are separated by 380 nucleotides Shew_1369: fliI - flagellum-specific ATP synthase (RefSeq), at 1,578,763 to 1,580,103 fliI Shew_1370: Shew_1370 - flagellar export protein FliJ (RefSeq), at 1,580,133 to 1,580,579 _1370 Shew_1371: Shew_1371 - flagellar hook-length control protein (RefSeq), at 1,580,960 to 1,582,666 _1371 Position (kb) 1580 1581Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1579.284 kb on + strand, within fliIat 1579.292 kb on - strand, within fliIat 1579.866 kb on - strand, within fliIat 1580.254 kb on + strand, within Shew_1370at 1580.598 kb on + strandat 1581.568 kb on + strand, within Shew_1371

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,579,284 + fliI Shew_1369 0.39 +2.3
1,579,292 - fliI Shew_1369 0.39 -3.3
1,579,866 - fliI Shew_1369 0.82 +4.3
1,580,254 + Shew_1370 0.27 -4.0
1,580,598 + +1.3
1,581,568 + Shew_1371 0.36 +2.7

Or see this region's nucleotide sequence