Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0724 and Shew_0725 are separated by 10 nucleotides Shew_0725 and Shew_0726 are separated by 127 nucleotides
Shew_0724: Shew_0724 - hypothetical protein (RefSeq), at 823,446 to 824,756
_0724
Shew_0725: Shew_0725 - hypothetical protein (RefSeq), at 824,767 to 825,963
_0725
Shew_0726: Shew_0726 - two component, sigma54 specific, Fis family transcriptional regulator (RefSeq), at 826,091 to 827,575
_0726
Position (kb) 824
825
826 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 823.773 kb on - strand, within Shew_0724 at 823.800 kb on - strand, within Shew_0724 at 823.800 kb on - strand, within Shew_0724 at 824.058 kb on + strand, within Shew_0724 at 824.567 kb on + strand, within Shew_0724 at 824.567 kb on + strand, within Shew_0724 at 824.581 kb on - strand, within Shew_0724 at 824.644 kb on + strand at 824.657 kb on - strand at 824.935 kb on + strand, within Shew_0725 at 824.943 kb on - strand, within Shew_0725 at 825.003 kb on + strand, within Shew_0725 at 825.161 kb on + strand, within Shew_0725 at 825.257 kb on + strand, within Shew_0725 at 825.632 kb on + strand, within Shew_0725 at 825.640 kb on - strand, within Shew_0725 at 825.645 kb on - strand, within Shew_0725 at 825.733 kb on - strand, within Shew_0725 at 825.755 kb on - strand, within Shew_0725 at 826.411 kb on + strand, within Shew_0726 at 826.576 kb on - strand, within Shew_0726 at 826.622 kb on - strand, within Shew_0726 at 826.950 kb on - strand, within Shew_0726
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 823,773 - Shew_0724 0.25 +0.9 823,800 - Shew_0724 0.27 -2.4 823,800 - Shew_0724 0.27 -0.9 824,058 + Shew_0724 0.47 -1.4 824,567 + Shew_0724 0.86 -2.4 824,567 + Shew_0724 0.86 -0.2 824,581 - Shew_0724 0.87 -0.7 824,644 + +0.4 824,657 - -1.2 824,935 + Shew_0725 0.14 -2.0 824,943 - Shew_0725 0.15 -1.0 825,003 + Shew_0725 0.20 -1.6 825,161 + Shew_0725 0.33 -0.9 825,257 + Shew_0725 0.41 -3.3 825,632 + Shew_0725 0.72 -3.0 825,640 - Shew_0725 0.73 -1.4 825,645 - Shew_0725 0.73 -2.1 825,733 - Shew_0725 0.81 -2.2 825,755 - Shew_0725 0.83 -1.5 826,411 + Shew_0726 0.22 +0.6 826,576 - Shew_0726 0.33 -1.9 826,622 - Shew_0726 0.36 +0.6 826,950 - Shew_0726 0.58 +0.6
Or see this region's nucleotide sequence