Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0340 and Shew_0341 are separated by 288 nucleotides Shew_0341 and Shew_0342 are separated by 50 nucleotides Shew_0342 and Shew_0343 are separated by 229 nucleotides
Shew_0340: Shew_0340 - Ppx/GppA phosphatase (RefSeq), at 385,890 to 386,822
_0340
Shew_0341: Shew_0341 - TonB-dependent receptor (RefSeq), at 387,111 to 389,840
_0341
Shew_0342: Shew_0342 - hypothetical protein (RefSeq), at 389,891 to 390,427
_0342
Shew_0343: Shew_0343 - hypothetical protein (RefSeq), at 390,657 to 391,235
_0343
Position (kb) 387
388
389
390 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 386.132 kb on + strand, within Shew_0340 at 386.207 kb on - strand, within Shew_0340 at 386.559 kb on + strand, within Shew_0340 at 387.109 kb on + strand at 387.225 kb on - strand at 387.230 kb on - strand at 387.413 kb on + strand, within Shew_0341 at 387.413 kb on + strand, within Shew_0341 at 387.473 kb on + strand, within Shew_0341 at 387.677 kb on - strand, within Shew_0341 at 388.146 kb on + strand, within Shew_0341 at 388.204 kb on + strand, within Shew_0341 at 388.204 kb on + strand, within Shew_0341 at 388.204 kb on + strand, within Shew_0341 at 388.211 kb on - strand, within Shew_0341 at 388.212 kb on - strand, within Shew_0341 at 388.212 kb on - strand, within Shew_0341 at 388.212 kb on - strand, within Shew_0341 at 388.212 kb on - strand, within Shew_0341 at 388.212 kb on - strand, within Shew_0341 at 388.212 kb on - strand, within Shew_0341 at 388.212 kb on - strand, within Shew_0341 at 388.242 kb on + strand, within Shew_0341 at 388.274 kb on - strand, within Shew_0341 at 388.317 kb on + strand, within Shew_0341 at 388.317 kb on + strand, within Shew_0341 at 388.325 kb on - strand, within Shew_0341 at 388.467 kb on + strand, within Shew_0341 at 388.494 kb on + strand, within Shew_0341 at 388.610 kb on + strand, within Shew_0341 at 388.758 kb on + strand, within Shew_0341 at 388.768 kb on + strand, within Shew_0341 at 388.773 kb on + strand, within Shew_0341 at 388.879 kb on + strand, within Shew_0341 at 388.925 kb on - strand, within Shew_0341 at 389.107 kb on + strand, within Shew_0341 at 389.158 kb on - strand, within Shew_0341 at 389.338 kb on - strand, within Shew_0341 at 389.350 kb on + strand, within Shew_0341 at 389.595 kb on + strand at 389.630 kb on - strand at 389.697 kb on - strand at 389.815 kb on - strand at 390.008 kb on - strand, within Shew_0342 at 390.049 kb on + strand, within Shew_0342 at 390.088 kb on + strand, within Shew_0342 at 390.294 kb on - strand, within Shew_0342 at 390.307 kb on + strand, within Shew_0342 at 390.388 kb on + strand at 390.396 kb on - strand at 390.564 kb on - strand at 390.634 kb on - strand at 390.711 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 386,132 + Shew_0340 0.26 -1.8 386,207 - Shew_0340 0.34 -2.5 386,559 + Shew_0340 0.72 -2.0 387,109 + +0.5 387,225 - +0.1 387,230 - +1.3 387,413 + Shew_0341 0.11 +0.2 387,413 + Shew_0341 0.11 +0.9 387,473 + Shew_0341 0.13 +0.9 387,677 - Shew_0341 0.21 +1.0 388,146 + Shew_0341 0.38 +0.5 388,204 + Shew_0341 0.40 -0.8 388,204 + Shew_0341 0.40 +0.3 388,204 + Shew_0341 0.40 +1.6 388,211 - Shew_0341 0.40 +0.3 388,212 - Shew_0341 0.40 +0.4 388,212 - Shew_0341 0.40 +0.1 388,212 - Shew_0341 0.40 -0.2 388,212 - Shew_0341 0.40 -1.0 388,212 - Shew_0341 0.40 -0.8 388,212 - Shew_0341 0.40 +0.1 388,212 - Shew_0341 0.40 +0.8 388,242 + Shew_0341 0.41 +3.7 388,274 - Shew_0341 0.43 -0.6 388,317 + Shew_0341 0.44 -0.2 388,317 + Shew_0341 0.44 -0.9 388,325 - Shew_0341 0.44 +0.9 388,467 + Shew_0341 0.50 +3.4 388,494 + Shew_0341 0.51 -1.2 388,610 + Shew_0341 0.55 -1.1 388,758 + Shew_0341 0.60 -1.5 388,768 + Shew_0341 0.61 +0.1 388,773 + Shew_0341 0.61 -2.8 388,879 + Shew_0341 0.65 +0.7 388,925 - Shew_0341 0.66 +0.8 389,107 + Shew_0341 0.73 -2.5 389,158 - Shew_0341 0.75 -1.6 389,338 - Shew_0341 0.82 +1.2 389,350 + Shew_0341 0.82 -0.1 389,595 + +0.6 389,630 - +0.1 389,697 - -2.2 389,815 - +0.1 390,008 - Shew_0342 0.22 +0.2 390,049 + Shew_0342 0.29 -1.8 390,088 + Shew_0342 0.37 +0.6 390,294 - Shew_0342 0.75 -0.2 390,307 + Shew_0342 0.77 -2.8 390,388 + +0.1 390,396 - -0.1 390,564 - +0.3 390,634 - -0.5 390,711 - +0.1
Or see this region's nucleotide sequence