Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0235 and Shew_0236 are separated by 117 nucleotides Shew_0236 and Shew_0237 are separated by 10 nucleotides
Shew_0235: Shew_0235 - isochorismatase hydrolase (RefSeq), at 250,449 to 251,399
_0235
Shew_0236: Shew_0236 - LysR family transcriptional regulator (RefSeq), at 251,517 to 252,434
_0236
Shew_0237: Shew_0237 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 252,445 to 254,343
_0237
Position (kb) 251
252
253 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 250.659 kb on + strand, within Shew_0235 at 250.659 kb on + strand, within Shew_0235 at 250.662 kb on - strand, within Shew_0235 at 250.667 kb on - strand, within Shew_0235 at 250.667 kb on - strand, within Shew_0235 at 250.936 kb on + strand, within Shew_0235 at 251.742 kb on + strand, within Shew_0236 at 251.760 kb on - strand, within Shew_0236 at 252.100 kb on + strand, within Shew_0236 at 252.182 kb on + strand, within Shew_0236 at 252.243 kb on - strand, within Shew_0236 at 252.691 kb on + strand, within Shew_0237 at 252.702 kb on + strand, within Shew_0237 at 252.987 kb on + strand, within Shew_0237 at 253.048 kb on - strand, within Shew_0237 at 253.053 kb on - strand, within Shew_0237 at 253.224 kb on - strand, within Shew_0237 at 253.396 kb on - strand, within Shew_0237 at 253.396 kb on - strand, within Shew_0237 at 253.396 kb on - strand, within Shew_0237 at 253.413 kb on - strand, within Shew_0237
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 250,659 + Shew_0235 0.22 -0.9 250,659 + Shew_0235 0.22 +0.3 250,662 - Shew_0235 0.22 +0.1 250,667 - Shew_0235 0.23 -0.2 250,667 - Shew_0235 0.23 -0.7 250,936 + Shew_0235 0.51 -0.6 251,742 + Shew_0236 0.25 +0.3 251,760 - Shew_0236 0.26 +1.3 252,100 + Shew_0236 0.64 +0.5 252,182 + Shew_0236 0.72 +0.1 252,243 - Shew_0236 0.79 -0.6 252,691 + Shew_0237 0.13 +0.5 252,702 + Shew_0237 0.14 +0.1 252,987 + Shew_0237 0.29 -3.4 253,048 - Shew_0237 0.32 +0.0 253,053 - Shew_0237 0.32 -3.0 253,224 - Shew_0237 0.41 +2.5 253,396 - Shew_0237 0.50 -0.6 253,396 - Shew_0237 0.50 -1.6 253,396 - Shew_0237 0.50 -0.4 253,413 - Shew_0237 0.51 +2.0
Or see this region's nucleotide sequence