Strain Fitness in Shewanella loihica PV-4 around Shew_0235

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0233 and Shew_0234 are separated by 74 nucleotidesShew_0234 and Shew_0235 are separated by 13 nucleotidesShew_0235 and Shew_0236 are separated by 117 nucleotides Shew_0233: Shew_0233 - hypothetical protein (RefSeq), at 247,659 to 250,001 _0233 Shew_0234: Shew_0234 - hypothetical protein (RefSeq), at 250,076 to 250,435 _0234 Shew_0235: Shew_0235 - isochorismatase hydrolase (RefSeq), at 250,449 to 251,399 _0235 Shew_0236: Shew_0236 - LysR family transcriptional regulator (RefSeq), at 251,517 to 252,434 _0236 Position (kb) 250 251 252Strain fitness (log2 ratio) -2 -1 0 1at 249.635 kb on - strand, within Shew_0233at 249.635 kb on - strand, within Shew_0233at 249.818 kb on + strandat 249.982 kb on - strandat 250.144 kb on + strand, within Shew_0234at 250.151 kb on + strand, within Shew_0234at 250.179 kb on - strand, within Shew_0234at 250.224 kb on + strand, within Shew_0234at 250.481 kb on + strandat 250.659 kb on + strand, within Shew_0235at 250.659 kb on + strand, within Shew_0235at 250.662 kb on - strand, within Shew_0235at 250.667 kb on - strand, within Shew_0235at 250.667 kb on - strand, within Shew_0235at 250.936 kb on + strand, within Shew_0235at 251.742 kb on + strand, within Shew_0236at 251.760 kb on - strand, within Shew_0236at 252.100 kb on + strand, within Shew_0236at 252.182 kb on + strand, within Shew_0236at 252.243 kb on - strand, within Shew_0236

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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249,635 - Shew_0233 0.84 -2.7
249,635 - Shew_0233 0.84 -1.4
249,818 + -0.1
249,982 - +0.6
250,144 + Shew_0234 0.19 +0.7
250,151 + Shew_0234 0.21 +1.5
250,179 - Shew_0234 0.29 -1.0
250,224 + Shew_0234 0.41 -0.7
250,481 + -1.4
250,659 + Shew_0235 0.22 -0.9
250,659 + Shew_0235 0.22 +0.3
250,662 - Shew_0235 0.22 +0.1
250,667 - Shew_0235 0.23 -0.2
250,667 - Shew_0235 0.23 -0.7
250,936 + Shew_0235 0.51 -0.6
251,742 + Shew_0236 0.25 +0.3
251,760 - Shew_0236 0.26 +1.3
252,100 + Shew_0236 0.64 +0.5
252,182 + Shew_0236 0.72 +0.1
252,243 - Shew_0236 0.79 -0.6

Or see this region's nucleotide sequence