Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0230 and Shew_0231 are separated by 183 nucleotides Shew_0231 and Shew_0232 are separated by 192 nucleotides Shew_0232 and Shew_0233 are separated by 130 nucleotides
Shew_0230: Shew_0230 - hypothetical protein (RefSeq), at 243,776 to 245,485
_0230
Shew_0231: Shew_0231 - hypothetical protein (RefSeq), at 245,669 to 246,940
_0231
Shew_0232: Shew_0232 - hypothetical protein (RefSeq), at 247,133 to 247,528
_0232
Shew_0233: Shew_0233 - hypothetical protein (RefSeq), at 247,659 to 250,001
_0233
Position (kb) 245
246
247 Strain fitness (log2 ratio) -2
-1
0
1
2 at 244.764 kb on - strand, within Shew_0230 at 244.774 kb on - strand, within Shew_0230 at 244.774 kb on - strand, within Shew_0230 at 245.030 kb on + strand, within Shew_0230 at 245.050 kb on + strand, within Shew_0230 at 245.102 kb on + strand, within Shew_0230 at 245.285 kb on + strand, within Shew_0230 at 245.290 kb on + strand, within Shew_0230 at 245.463 kb on + strand at 245.477 kb on + strand at 245.482 kb on + strand at 245.898 kb on + strand, within Shew_0231 at 245.901 kb on - strand, within Shew_0231 at 245.942 kb on - strand, within Shew_0231 at 246.016 kb on + strand, within Shew_0231 at 246.059 kb on - strand, within Shew_0231 at 246.334 kb on - strand, within Shew_0231 at 246.391 kb on - strand, within Shew_0231 at 246.690 kb on - strand, within Shew_0231 at 247.136 kb on - strand at 247.235 kb on - strand, within Shew_0232 at 247.264 kb on - strand, within Shew_0232 at 247.415 kb on - strand, within Shew_0232 at 247.415 kb on - strand, within Shew_0232 at 247.420 kb on - strand, within Shew_0232 at 247.587 kb on - strand at 247.685 kb on - strand at 247.745 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 244,764 - Shew_0230 0.58 +1.0 244,774 - Shew_0230 0.58 +1.4 244,774 - Shew_0230 0.58 -0.6 245,030 + Shew_0230 0.73 -0.8 245,050 + Shew_0230 0.75 +0.3 245,102 + Shew_0230 0.78 +1.0 245,285 + Shew_0230 0.88 -0.0 245,290 + Shew_0230 0.89 -1.1 245,463 + +1.5 245,477 + -1.3 245,482 + -0.6 245,898 + Shew_0231 0.18 +1.2 245,901 - Shew_0231 0.18 +1.5 245,942 - Shew_0231 0.21 +2.0 246,016 + Shew_0231 0.27 +1.3 246,059 - Shew_0231 0.31 +1.3 246,334 - Shew_0231 0.52 +1.0 246,391 - Shew_0231 0.57 +0.9 246,690 - Shew_0231 0.80 +2.5 247,136 - +0.1 247,235 - Shew_0232 0.26 -1.2 247,264 - Shew_0232 0.33 +1.3 247,415 - Shew_0232 0.71 -0.9 247,415 - Shew_0232 0.71 -2.1 247,420 - Shew_0232 0.72 +0.1 247,587 - -0.2 247,685 - +0.3 247,745 + +0.4
Or see this region's nucleotide sequence