Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0068 and Shew_0069 are separated by 44 nucleotides Shew_0069 and Shew_0070 are separated by 178 nucleotides
Shew_0068: Shew_0068 - fumarate lyase (RefSeq), at 80,976 to 82,355
_0068
Shew_0069: Shew_0069 - hypothetical protein (RefSeq), at 82,400 to 83,503
_0069
Shew_0070: Shew_0070 - iron-containing alcohol dehydrogenase (RefSeq), at 83,682 to 84,845
_0070
Position (kb) 82
83
84 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 81.407 kb on - strand, within Shew_0068 at 81.690 kb on - strand, within Shew_0068 at 81.797 kb on + strand, within Shew_0068 at 81.871 kb on + strand, within Shew_0068 at 81.888 kb on - strand, within Shew_0068 at 81.937 kb on - strand, within Shew_0068 at 82.068 kb on - strand, within Shew_0068 at 82.195 kb on + strand, within Shew_0068 at 82.386 kb on + strand at 82.389 kb on - strand at 82.413 kb on + strand at 82.416 kb on - strand at 82.471 kb on + strand at 82.471 kb on + strand at 82.671 kb on - strand, within Shew_0069 at 82.671 kb on - strand, within Shew_0069 at 82.853 kb on - strand, within Shew_0069 at 82.881 kb on - strand, within Shew_0069 at 83.228 kb on + strand, within Shew_0069 at 83.235 kb on - strand, within Shew_0069 at 83.235 kb on - strand, within Shew_0069 at 83.309 kb on - strand, within Shew_0069 at 83.438 kb on - strand at 83.453 kb on + strand at 83.749 kb on + strand at 83.931 kb on - strand, within Shew_0070 at 83.946 kb on + strand, within Shew_0070 at 83.972 kb on - strand, within Shew_0070 at 84.106 kb on + strand, within Shew_0070 at 84.204 kb on + strand, within Shew_0070 at 84.270 kb on - strand, within Shew_0070 at 84.282 kb on - strand, within Shew_0070
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 81,407 - Shew_0068 0.31 +0.3 81,690 - Shew_0068 0.52 -0.1 81,797 + Shew_0068 0.59 +1.1 81,871 + Shew_0068 0.65 -1.8 81,888 - Shew_0068 0.66 +0.0 81,937 - Shew_0068 0.70 +0.2 82,068 - Shew_0068 0.79 -0.4 82,195 + Shew_0068 0.88 +0.3 82,386 + -0.5 82,389 - +0.2 82,413 + -0.1 82,416 - -1.9 82,471 + +0.7 82,471 + +1.9 82,671 - Shew_0069 0.25 -1.9 82,671 - Shew_0069 0.25 +0.9 82,853 - Shew_0069 0.41 +0.4 82,881 - Shew_0069 0.44 -2.6 83,228 + Shew_0069 0.75 -0.3 83,235 - Shew_0069 0.76 +0.1 83,235 - Shew_0069 0.76 -0.9 83,309 - Shew_0069 0.82 -2.4 83,438 - +0.1 83,453 + -0.5 83,749 + +1.2 83,931 - Shew_0070 0.21 -0.8 83,946 + Shew_0070 0.23 +0.2 83,972 - Shew_0070 0.25 -0.2 84,106 + Shew_0070 0.36 +0.4 84,204 + Shew_0070 0.45 -3.0 84,270 - Shew_0070 0.51 +0.3 84,282 - Shew_0070 0.52 -0.0
Or see this region's nucleotide sequence