Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0036 and Shew_0037 are separated by 92 nucleotides Shew_0037 and Shew_0038 are separated by 162 nucleotides Shew_0038 and Shew_0039 are separated by 1 nucleotides
Shew_0036: Shew_0036 - phosphoesterase, PA-phosphatase related (RefSeq), at 41,568 to 42,389
_0036
Shew_0037: Shew_0037 - phosphoesterase, PA-phosphatase related (RefSeq), at 42,482 to 43,300
_0037
Shew_0038: Shew_0038 - excinuclease ABC subunit C (RefSeq), at 43,463 to 43,756
_0038
Shew_0039: Shew_0039 - oligopeptidase B (RefSeq), at 43,758 to 45,818
_0039
Position (kb) 42
43
44 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 41.549 kb on + strand at 41.565 kb on + strand at 41.611 kb on - strand at 41.808 kb on + strand, within Shew_0036 at 41.840 kb on + strand, within Shew_0036 at 41.908 kb on + strand, within Shew_0036 at 42.161 kb on + strand, within Shew_0036 at 42.218 kb on + strand, within Shew_0036 at 42.279 kb on + strand, within Shew_0036 at 42.372 kb on - strand at 42.462 kb on + strand at 42.513 kb on - strand at 42.637 kb on + strand, within Shew_0037 at 42.677 kb on - strand, within Shew_0037 at 42.798 kb on - strand, within Shew_0037 at 42.840 kb on - strand, within Shew_0037 at 42.869 kb on + strand, within Shew_0037 at 43.138 kb on - strand, within Shew_0037 at 43.192 kb on - strand, within Shew_0037 at 43.586 kb on - strand, within Shew_0038 at 43.621 kb on - strand, within Shew_0038 at 43.683 kb on + strand, within Shew_0038 at 43.691 kb on - strand, within Shew_0038 at 43.726 kb on + strand, within Shew_0038 at 43.940 kb on + strand at 43.955 kb on + strand at 43.955 kb on + strand at 44.135 kb on - strand, within Shew_0039 at 44.256 kb on + strand, within Shew_0039
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 41,549 + +0.9 41,565 + -0.1 41,611 - +0.1 41,808 + Shew_0036 0.29 -0.3 41,840 + Shew_0036 0.33 +0.3 41,908 + Shew_0036 0.41 -2.9 42,161 + Shew_0036 0.72 -0.3 42,218 + Shew_0036 0.79 -0.5 42,279 + Shew_0036 0.86 -3.8 42,372 - -0.8 42,462 + -0.4 42,513 - -0.6 42,637 + Shew_0037 0.19 +0.1 42,677 - Shew_0037 0.24 +0.5 42,798 - Shew_0037 0.39 -0.6 42,840 - Shew_0037 0.44 +1.0 42,869 + Shew_0037 0.47 +1.4 43,138 - Shew_0037 0.80 +1.0 43,192 - Shew_0037 0.87 +0.3 43,586 - Shew_0038 0.42 +0.3 43,621 - Shew_0038 0.54 -0.4 43,683 + Shew_0038 0.75 -1.5 43,691 - Shew_0038 0.78 -0.7 43,726 + Shew_0038 0.89 +0.1 43,940 + -0.0 43,955 + -0.5 43,955 + -0.2 44,135 - Shew_0039 0.18 -1.7 44,256 + Shew_0039 0.24 -0.9
Or see this region's nucleotide sequence