Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5939 and Pf6N2E2_5940 overlap by 1 nucleotides Pf6N2E2_5940 and Pf6N2E2_5941 are separated by 20 nucleotides Pf6N2E2_5941 and Pf6N2E2_5942 are separated by 226 nucleotides
Pf6N2E2_5939 - Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16), at 6,757,608 to 6,759,923
_5939
Pf6N2E2_5940 - Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family, at 6,759,923 to 6,760,894
_5940
Pf6N2E2_5941 - CTP:molybdopterin cytidylyltransferase, at 6,760,915 to 6,761,505
_5941
Pf6N2E2_5942 - Ribonuclease E (EC 3.1.26.12), at 6,761,732 to 6,764,929
_5942
Position (kb)
6760
6761
6762 Strain fitness (log2 ratio)
-1
0
1
2 at 6760.172 kb on + strand, within Pf6N2E2_5940 at 6760.172 kb on + strand, within Pf6N2E2_5940 at 6760.172 kb on + strand, within Pf6N2E2_5940 at 6760.173 kb on - strand, within Pf6N2E2_5940 at 6760.173 kb on - strand, within Pf6N2E2_5940 at 6760.173 kb on - strand, within Pf6N2E2_5940 at 6760.173 kb on - strand, within Pf6N2E2_5940 at 6760.173 kb on - strand, within Pf6N2E2_5940 at 6760.401 kb on + strand, within Pf6N2E2_5940 at 6760.402 kb on - strand, within Pf6N2E2_5940 at 6760.402 kb on - strand, within Pf6N2E2_5940 at 6760.403 kb on + strand, within Pf6N2E2_5940 at 6760.403 kb on + strand, within Pf6N2E2_5940 at 6760.403 kb on + strand, within Pf6N2E2_5940 at 6760.403 kb on + strand, within Pf6N2E2_5940 at 6760.403 kb on + strand, within Pf6N2E2_5940 at 6760.403 kb on + strand, within Pf6N2E2_5940 at 6760.403 kb on + strand, within Pf6N2E2_5940 at 6760.404 kb on - strand, within Pf6N2E2_5940 at 6760.404 kb on - strand, within Pf6N2E2_5940 at 6760.404 kb on - strand, within Pf6N2E2_5940 at 6760.404 kb on - strand, within Pf6N2E2_5940 at 6760.404 kb on - strand, within Pf6N2E2_5940 at 6760.404 kb on - strand, within Pf6N2E2_5940 at 6760.404 kb on - strand, within Pf6N2E2_5940 at 6760.404 kb on - strand, within Pf6N2E2_5940 at 6760.454 kb on + strand, within Pf6N2E2_5940 at 6760.523 kb on + strand, within Pf6N2E2_5940 at 6760.524 kb on - strand, within Pf6N2E2_5940 at 6760.682 kb on + strand, within Pf6N2E2_5940 at 6760.682 kb on + strand, within Pf6N2E2_5940 at 6760.730 kb on - strand, within Pf6N2E2_5940 at 6760.730 kb on - strand, within Pf6N2E2_5940 at 6760.743 kb on + strand, within Pf6N2E2_5940 at 6760.743 kb on + strand, within Pf6N2E2_5940 at 6760.744 kb on - strand, within Pf6N2E2_5940 at 6760.892 kb on + strand at 6760.892 kb on + strand at 6760.892 kb on + strand at 6760.892 kb on + strand at 6760.893 kb on - strand at 6760.893 kb on - strand at 6760.914 kb on + strand at 6760.914 kb on + strand at 6760.914 kb on + strand at 6760.915 kb on - strand at 6760.915 kb on - strand at 6760.995 kb on + strand, within Pf6N2E2_5941 at 6760.995 kb on + strand, within Pf6N2E2_5941 at 6760.995 kb on + strand, within Pf6N2E2_5941 at 6760.996 kb on - strand, within Pf6N2E2_5941 at 6760.996 kb on - strand, within Pf6N2E2_5941 at 6760.996 kb on - strand, within Pf6N2E2_5941 at 6760.996 kb on - strand, within Pf6N2E2_5941 at 6760.996 kb on - strand, within Pf6N2E2_5941 at 6761.140 kb on + strand, within Pf6N2E2_5941 at 6761.140 kb on + strand, within Pf6N2E2_5941 at 6761.141 kb on - strand, within Pf6N2E2_5941 at 6761.247 kb on + strand, within Pf6N2E2_5941 at 6761.247 kb on + strand, within Pf6N2E2_5941 at 6761.248 kb on - strand, within Pf6N2E2_5941 at 6761.248 kb on - strand, within Pf6N2E2_5941 at 6761.335 kb on + strand, within Pf6N2E2_5941 at 6761.335 kb on + strand, within Pf6N2E2_5941 at 6761.503 kb on + strand at 6761.503 kb on + strand at 6761.631 kb on + strand at 6761.631 kb on + strand at 6761.631 kb on + strand at 6761.631 kb on + strand at 6761.632 kb on - strand at 6761.665 kb on + strand at 6761.665 kb on + strand at 6761.665 kb on + strand at 6761.669 kb on + strand at 6761.669 kb on + strand at 6761.669 kb on + strand at 6761.669 kb on + strand at 6761.669 kb on + strand at 6761.669 kb on + strand at 6761.669 kb on + strand at 6761.670 kb on - strand at 6761.670 kb on - strand at 6761.670 kb on - strand at 6761.670 kb on - strand at 6761.670 kb on - strand at 6761.670 kb on - strand at 6761.670 kb on - strand at 6761.670 kb on - strand at 6761.718 kb on - strand at 6761.747 kb on - strand at 6761.747 kb on - strand at 6762.375 kb on - strand, within Pf6N2E2_5942
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 6,760,172 + Pf6N2E2_5940 0.26 -0.5 6,760,172 + Pf6N2E2_5940 0.26 +1.4 6,760,172 + Pf6N2E2_5940 0.26 +0.2 6,760,173 - Pf6N2E2_5940 0.26 -0.4 6,760,173 - Pf6N2E2_5940 0.26 +0.9 6,760,173 - Pf6N2E2_5940 0.26 +0.1 6,760,173 - Pf6N2E2_5940 0.26 +0.5 6,760,173 - Pf6N2E2_5940 0.26 +0.6 6,760,401 + Pf6N2E2_5940 0.49 +0.3 6,760,402 - Pf6N2E2_5940 0.49 +0.9 6,760,402 - Pf6N2E2_5940 0.49 +0.9 6,760,403 + Pf6N2E2_5940 0.49 -0.1 6,760,403 + Pf6N2E2_5940 0.49 +0.3 6,760,403 + Pf6N2E2_5940 0.49 +1.6 6,760,403 + Pf6N2E2_5940 0.49 +0.9 6,760,403 + Pf6N2E2_5940 0.49 +0.7 6,760,403 + Pf6N2E2_5940 0.49 +0.1 6,760,403 + Pf6N2E2_5940 0.49 +1.1 6,760,404 - Pf6N2E2_5940 0.49 +0.4 6,760,404 - Pf6N2E2_5940 0.49 -0.1 6,760,404 - Pf6N2E2_5940 0.49 +1.2 6,760,404 - Pf6N2E2_5940 0.49 +1.4 6,760,404 - Pf6N2E2_5940 0.49 +0.8 6,760,404 - Pf6N2E2_5940 0.49 +0.0 6,760,404 - Pf6N2E2_5940 0.49 -0.1 6,760,404 - Pf6N2E2_5940 0.49 +0.6 6,760,454 + Pf6N2E2_5940 0.55 +0.8 6,760,523 + Pf6N2E2_5940 0.62 +0.6 6,760,524 - Pf6N2E2_5940 0.62 -0.3 6,760,682 + Pf6N2E2_5940 0.78 +1.2 6,760,682 + Pf6N2E2_5940 0.78 +0.5 6,760,730 - Pf6N2E2_5940 0.83 +0.2 6,760,730 - Pf6N2E2_5940 0.83 +1.3 6,760,743 + Pf6N2E2_5940 0.84 +1.4 6,760,743 + Pf6N2E2_5940 0.84 -0.0 6,760,744 - Pf6N2E2_5940 0.84 +1.2 6,760,892 + -0.9 6,760,892 + +0.7 6,760,892 + -0.3 6,760,892 + -0.5 6,760,893 - -0.3 6,760,893 - +0.7 6,760,914 + +0.2 6,760,914 + +0.2 6,760,914 + +0.2 6,760,915 - -0.1 6,760,915 - -0.1 6,760,995 + Pf6N2E2_5941 0.14 +1.8 6,760,995 + Pf6N2E2_5941 0.14 +1.3 6,760,995 + Pf6N2E2_5941 0.14 +1.1 6,760,996 - Pf6N2E2_5941 0.14 +1.5 6,760,996 - Pf6N2E2_5941 0.14 +2.2 6,760,996 - Pf6N2E2_5941 0.14 +2.0 6,760,996 - Pf6N2E2_5941 0.14 +0.8 6,760,996 - Pf6N2E2_5941 0.14 +1.7 6,761,140 + Pf6N2E2_5941 0.38 +1.7 6,761,140 + Pf6N2E2_5941 0.38 +1.9 6,761,141 - Pf6N2E2_5941 0.38 +0.7 6,761,247 + Pf6N2E2_5941 0.56 +1.1 6,761,247 + Pf6N2E2_5941 0.56 +1.4 6,761,248 - Pf6N2E2_5941 0.56 +2.1 6,761,248 - Pf6N2E2_5941 0.56 +1.3 6,761,335 + Pf6N2E2_5941 0.71 +1.5 6,761,335 + Pf6N2E2_5941 0.71 +1.6 6,761,503 + -0.5 6,761,503 + +1.9 6,761,631 + -1.0 6,761,631 + +0.5 6,761,631 + -0.1 6,761,631 + +0.2 6,761,632 - +0.3 6,761,665 + +0.4 6,761,665 + -0.6 6,761,665 + -0.1 6,761,669 + -0.4 6,761,669 + +0.1 6,761,669 + +0.6 6,761,669 + -0.6 6,761,669 + +1.0 6,761,669 + +0.7 6,761,669 + -0.4 6,761,670 - +0.2 6,761,670 - +0.2 6,761,670 - +1.3 6,761,670 - +0.0 6,761,670 - +0.2 6,761,670 - +0.5 6,761,670 - -1.1 6,761,670 - -0.2 6,761,718 - +0.1 6,761,747 - +0.2 6,761,747 - +0.7 6,762,375 - Pf6N2E2_5942 0.20 -1.3
Or see this region's nucleotide sequence