Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4401

Experiment: Tween 20 (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_4400 and Pf6N2E2_4401 are separated by 152 nucleotidesPf6N2E2_4401 and Pf6N2E2_4402 are separated by 187 nucleotides Pf6N2E2_4400 - Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog, at 5,130,348 to 5,131,748 _4400 Pf6N2E2_4401 - Glycine cleavage system transcriptional activator, at 5,131,901 to 5,132,821 _4401 Pf6N2E2_4402 - Methyl-accepting chemotaxis protein, at 5,133,009 to 5,134,985 _4402 Position (kb) 5131 5132 5133Strain fitness (log2 ratio) -2 -1 0 1 2at 5130.997 kb on + strand, within Pf6N2E2_4400at 5130.997 kb on + strand, within Pf6N2E2_4400at 5130.997 kb on + strand, within Pf6N2E2_4400at 5130.998 kb on - strand, within Pf6N2E2_4400at 5130.998 kb on - strand, within Pf6N2E2_4400at 5131.091 kb on - strand, within Pf6N2E2_4400at 5131.109 kb on + strand, within Pf6N2E2_4400at 5131.110 kb on - strand, within Pf6N2E2_4400at 5131.110 kb on - strand, within Pf6N2E2_4400at 5131.216 kb on + strand, within Pf6N2E2_4400at 5131.216 kb on + strand, within Pf6N2E2_4400at 5131.216 kb on + strand, within Pf6N2E2_4400at 5131.216 kb on + strand, within Pf6N2E2_4400at 5131.217 kb on - strand, within Pf6N2E2_4400at 5131.321 kb on + strand, within Pf6N2E2_4400at 5131.465 kb on - strand, within Pf6N2E2_4400at 5131.580 kb on - strand, within Pf6N2E2_4400at 5131.774 kb on + strandat 5131.774 kb on + strandat 5131.775 kb on - strandat 5131.840 kb on + strandat 5131.868 kb on - strandat 5131.868 kb on - strandat 5131.868 kb on - strandat 5131.926 kb on - strandat 5131.926 kb on - strandat 5132.118 kb on + strand, within Pf6N2E2_4401at 5132.156 kb on - strand, within Pf6N2E2_4401at 5132.340 kb on + strand, within Pf6N2E2_4401at 5132.340 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.706 kb on - strand, within Pf6N2E2_4401at 5132.706 kb on - strand, within Pf6N2E2_4401at 5132.706 kb on - strand, within Pf6N2E2_4401at 5132.706 kb on - strand, within Pf6N2E2_4401at 5132.706 kb on - strand, within Pf6N2E2_4401at 5132.706 kb on - strand, within Pf6N2E2_4401at 5132.706 kb on - strand, within Pf6N2E2_4401at 5132.706 kb on - strand, within Pf6N2E2_4401at 5132.708 kb on + strand, within Pf6N2E2_4401at 5132.708 kb on + strand, within Pf6N2E2_4401at 5132.708 kb on + strand, within Pf6N2E2_4401at 5132.708 kb on + strand, within Pf6N2E2_4401at 5132.709 kb on - strand, within Pf6N2E2_4401at 5132.709 kb on - strand, within Pf6N2E2_4401at 5132.796 kb on + strandat 5132.797 kb on - strandat 5132.797 kb on - strandat 5132.877 kb on + strandat 5132.878 kb on - strandat 5132.931 kb on + strandat 5132.931 kb on + strandat 5132.931 kb on + strandat 5132.931 kb on + strandat 5132.932 kb on - strandat 5132.932 kb on - strandat 5132.932 kb on - strandat 5132.932 kb on - strandat 5132.932 kb on - strandat 5132.935 kb on + strandat 5132.935 kb on + strandat 5132.935 kb on + strandat 5132.935 kb on + strandat 5132.935 kb on + strandat 5132.935 kb on + strandat 5132.935 kb on + strandat 5132.935 kb on + strandat 5132.935 kb on + strandat 5132.936 kb on - strandat 5132.936 kb on - strandat 5132.936 kb on - strandat 5132.936 kb on - strandat 5132.936 kb on - strandat 5132.936 kb on - strandat 5132.951 kb on - strandat 5132.951 kb on - strandat 5133.043 kb on + strandat 5133.043 kb on + strandat 5133.043 kb on + strandat 5133.044 kb on - strandat 5133.044 kb on - strandat 5133.064 kb on + strandat 5133.185 kb on + strandat 5133.185 kb on + strandat 5133.185 kb on + strandat 5133.185 kb on + strandat 5133.185 kb on + strandat 5133.186 kb on - strandat 5133.186 kb on - strandat 5133.197 kb on + strandat 5133.198 kb on - strandat 5133.198 kb on - strandat 5133.198 kb on - strandat 5133.198 kb on - strandat 5133.431 kb on + strand, within Pf6N2E2_4402at 5133.431 kb on + strand, within Pf6N2E2_4402at 5133.431 kb on + strand, within Pf6N2E2_4402at 5133.431 kb on + strand, within Pf6N2E2_4402at 5133.525 kb on + strand, within Pf6N2E2_4402at 5133.525 kb on + strand, within Pf6N2E2_4402at 5133.525 kb on + strand, within Pf6N2E2_4402at 5133.525 kb on + strand, within Pf6N2E2_4402at 5133.525 kb on + strand, within Pf6N2E2_4402at 5133.525 kb on + strand, within Pf6N2E2_4402at 5133.526 kb on - strand, within Pf6N2E2_4402at 5133.526 kb on - strand, within Pf6N2E2_4402at 5133.526 kb on - strand, within Pf6N2E2_4402at 5133.526 kb on - strand, within Pf6N2E2_4402at 5133.526 kb on - strand, within Pf6N2E2_4402at 5133.526 kb on - strand, within Pf6N2E2_4402at 5133.526 kb on - strand, within Pf6N2E2_4402at 5133.526 kb on - strand, within Pf6N2E2_4402at 5133.526 kb on - strand, within Pf6N2E2_4402at 5133.526 kb on - strand, within Pf6N2E2_4402at 5133.526 kb on - strand, within Pf6N2E2_4402at 5133.558 kb on + strand, within Pf6N2E2_4402at 5133.558 kb on + strand, within Pf6N2E2_4402at 5133.558 kb on + strand, within Pf6N2E2_4402at 5133.558 kb on + strand, within Pf6N2E2_4402at 5133.558 kb on + strand, within Pf6N2E2_4402at 5133.558 kb on + strand, within Pf6N2E2_4402at 5133.558 kb on + strand, within Pf6N2E2_4402at 5133.558 kb on + strand, within Pf6N2E2_4402at 5133.558 kb on + strand, within Pf6N2E2_4402at 5133.558 kb on + strand, within Pf6N2E2_4402at 5133.558 kb on + strand, within Pf6N2E2_4402at 5133.559 kb on - strand, within Pf6N2E2_4402at 5133.559 kb on - strand, within Pf6N2E2_4402at 5133.559 kb on - strand, within Pf6N2E2_4402at 5133.559 kb on - strand, within Pf6N2E2_4402at 5133.559 kb on - strand, within Pf6N2E2_4402at 5133.559 kb on - strand, within Pf6N2E2_4402at 5133.559 kb on - strand, within Pf6N2E2_4402at 5133.559 kb on - strand, within Pf6N2E2_4402at 5133.559 kb on - strand, within Pf6N2E2_4402at 5133.559 kb on - strand, within Pf6N2E2_4402at 5133.571 kb on - strand, within Pf6N2E2_4402at 5133.615 kb on + strand, within Pf6N2E2_4402at 5133.615 kb on + strand, within Pf6N2E2_4402at 5133.615 kb on + strand, within Pf6N2E2_4402at 5133.615 kb on + strand, within Pf6N2E2_4402at 5133.615 kb on + strand, within Pf6N2E2_4402at 5133.616 kb on - strand, within Pf6N2E2_4402at 5133.616 kb on - strand, within Pf6N2E2_4402at 5133.616 kb on - strand, within Pf6N2E2_4402at 5133.616 kb on - strand, within Pf6N2E2_4402at 5133.616 kb on - strand, within Pf6N2E2_4402at 5133.616 kb on - strand, within Pf6N2E2_4402at 5133.616 kb on - strand, within Pf6N2E2_4402at 5133.616 kb on - strand, within Pf6N2E2_4402at 5133.616 kb on - strand, within Pf6N2E2_4402at 5133.616 kb on - strand, within Pf6N2E2_4402at 5133.619 kb on + strand, within Pf6N2E2_4402at 5133.619 kb on + strand, within Pf6N2E2_4402at 5133.619 kb on + strand, within Pf6N2E2_4402at 5133.619 kb on + strand, within Pf6N2E2_4402at 5133.620 kb on - strand, within Pf6N2E2_4402at 5133.620 kb on - strand, within Pf6N2E2_4402at 5133.630 kb on + strand, within Pf6N2E2_4402at 5133.631 kb on - strand, within Pf6N2E2_4402

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
remove
5,130,997 + Pf6N2E2_4400 0.46 +0.1
5,130,997 + Pf6N2E2_4400 0.46 -0.2
5,130,997 + Pf6N2E2_4400 0.46 -0.5
5,130,998 - Pf6N2E2_4400 0.46 +0.5
5,130,998 - Pf6N2E2_4400 0.46 -0.3
5,131,091 - Pf6N2E2_4400 0.53 -0.1
5,131,109 + Pf6N2E2_4400 0.54 -0.1
5,131,110 - Pf6N2E2_4400 0.54 -0.2
5,131,110 - Pf6N2E2_4400 0.54 -0.3
5,131,216 + Pf6N2E2_4400 0.62 +0.7
5,131,216 + Pf6N2E2_4400 0.62 +0.9
5,131,216 + Pf6N2E2_4400 0.62 -0.3
5,131,216 + Pf6N2E2_4400 0.62 -0.2
5,131,217 - Pf6N2E2_4400 0.62 +0.3
5,131,321 + Pf6N2E2_4400 0.69 +0.4
5,131,465 - Pf6N2E2_4400 0.80 -0.3
5,131,580 - Pf6N2E2_4400 0.88 +0.3
5,131,774 + +0.2
5,131,774 + +1.0
5,131,775 - -2.1
5,131,840 + -0.1
5,131,868 - +0.1
5,131,868 - +0.6
5,131,868 - +0.9
5,131,926 - -0.6
5,131,926 - +0.4
5,132,118 + Pf6N2E2_4401 0.24 +0.3
5,132,156 - Pf6N2E2_4401 0.28 -0.3
5,132,340 + Pf6N2E2_4401 0.48 +0.3
5,132,340 + Pf6N2E2_4401 0.48 +0.9
5,132,705 + Pf6N2E2_4401 0.87 +2.4
5,132,705 + Pf6N2E2_4401 0.87 +0.6
5,132,705 + Pf6N2E2_4401 0.87 +1.0
5,132,705 + Pf6N2E2_4401 0.87 +0.8
5,132,705 + Pf6N2E2_4401 0.87 +0.0
5,132,705 + Pf6N2E2_4401 0.87 -0.3
5,132,705 + Pf6N2E2_4401 0.87 +0.8
5,132,705 + Pf6N2E2_4401 0.87 +0.1
5,132,705 + Pf6N2E2_4401 0.87 +0.9
5,132,705 + Pf6N2E2_4401 0.87 +0.1
5,132,705 + Pf6N2E2_4401 0.87 -0.3
5,132,705 + Pf6N2E2_4401 0.87 +0.0
5,132,705 + Pf6N2E2_4401 0.87 +0.4
5,132,705 + Pf6N2E2_4401 0.87 -0.2
5,132,705 + Pf6N2E2_4401 0.87 +1.1
5,132,706 - Pf6N2E2_4401 0.87 +0.9
5,132,706 - Pf6N2E2_4401 0.87 +0.7
5,132,706 - Pf6N2E2_4401 0.87 +0.6
5,132,706 - Pf6N2E2_4401 0.87 -0.0
5,132,706 - Pf6N2E2_4401 0.87 +0.7
5,132,706 - Pf6N2E2_4401 0.87 +0.1
5,132,706 - Pf6N2E2_4401 0.87 -0.5
5,132,706 - Pf6N2E2_4401 0.87 +1.0
5,132,708 + Pf6N2E2_4401 0.88 -0.0
5,132,708 + Pf6N2E2_4401 0.88 +1.3
5,132,708 + Pf6N2E2_4401 0.88 +0.7
5,132,708 + Pf6N2E2_4401 0.88 -0.5
5,132,709 - Pf6N2E2_4401 0.88 +0.7
5,132,709 - Pf6N2E2_4401 0.88 +0.6
5,132,796 + -0.6
5,132,797 - +0.4
5,132,797 - +0.1
5,132,877 + -0.2
5,132,878 - +1.4
5,132,931 + -0.5
5,132,931 + -0.7
5,132,931 + +0.2
5,132,931 + +1.1
5,132,932 - +0.6
5,132,932 - +0.1
5,132,932 - +0.6
5,132,932 - -0.0
5,132,932 - +1.1
5,132,935 + +0.0
5,132,935 + +0.5
5,132,935 + +1.5
5,132,935 + -0.3
5,132,935 + +1.7
5,132,935 + -0.2
5,132,935 + +0.3
5,132,935 + +0.9
5,132,935 + +0.3
5,132,936 - -0.6
5,132,936 - -1.0
5,132,936 - +0.3
5,132,936 - +0.7
5,132,936 - +1.3
5,132,936 - -1.4
5,132,951 - +0.2
5,132,951 - +0.0
5,133,043 + +1.1
5,133,043 + +0.6
5,133,043 + +0.2
5,133,044 - -0.5
5,133,044 - -0.7
5,133,064 + +0.4
5,133,185 + +0.6
5,133,185 + +0.5
5,133,185 + -0.1
5,133,185 + +1.0
5,133,185 + -0.1
5,133,186 - -0.2
5,133,186 - +0.9
5,133,197 + +0.7
5,133,198 - +0.5
5,133,198 - -0.8
5,133,198 - +0.9
5,133,198 - -0.7
5,133,431 + Pf6N2E2_4402 0.21 +0.4
5,133,431 + Pf6N2E2_4402 0.21 +0.8
5,133,431 + Pf6N2E2_4402 0.21 -0.6
5,133,431 + Pf6N2E2_4402 0.21 +0.8
5,133,525 + Pf6N2E2_4402 0.26 -1.3
5,133,525 + Pf6N2E2_4402 0.26 -0.6
5,133,525 + Pf6N2E2_4402 0.26 +0.2
5,133,525 + Pf6N2E2_4402 0.26 +0.4
5,133,525 + Pf6N2E2_4402 0.26 -1.3
5,133,525 + Pf6N2E2_4402 0.26 +0.6
5,133,526 - Pf6N2E2_4402 0.26 +0.6
5,133,526 - Pf6N2E2_4402 0.26 +0.1
5,133,526 - Pf6N2E2_4402 0.26 +0.2
5,133,526 - Pf6N2E2_4402 0.26 -0.2
5,133,526 - Pf6N2E2_4402 0.26 +0.1
5,133,526 - Pf6N2E2_4402 0.26 +0.1
5,133,526 - Pf6N2E2_4402 0.26 +0.4
5,133,526 - Pf6N2E2_4402 0.26 +0.9
5,133,526 - Pf6N2E2_4402 0.26 +0.6
5,133,526 - Pf6N2E2_4402 0.26 +1.4
5,133,526 - Pf6N2E2_4402 0.26 -1.2
5,133,558 + Pf6N2E2_4402 0.28 -0.8
5,133,558 + Pf6N2E2_4402 0.28 -0.3
5,133,558 + Pf6N2E2_4402 0.28 +0.9
5,133,558 + Pf6N2E2_4402 0.28 +0.5
5,133,558 + Pf6N2E2_4402 0.28 -1.3
5,133,558 + Pf6N2E2_4402 0.28 +0.3
5,133,558 + Pf6N2E2_4402 0.28 +0.4
5,133,558 + Pf6N2E2_4402 0.28 +0.6
5,133,558 + Pf6N2E2_4402 0.28 -0.3
5,133,558 + Pf6N2E2_4402 0.28 +1.9
5,133,558 + Pf6N2E2_4402 0.28 -1.2
5,133,559 - Pf6N2E2_4402 0.28 +0.7
5,133,559 - Pf6N2E2_4402 0.28 -1.0
5,133,559 - Pf6N2E2_4402 0.28 +0.0
5,133,559 - Pf6N2E2_4402 0.28 -0.4
5,133,559 - Pf6N2E2_4402 0.28 +0.9
5,133,559 - Pf6N2E2_4402 0.28 -0.3
5,133,559 - Pf6N2E2_4402 0.28 +0.8
5,133,559 - Pf6N2E2_4402 0.28 +0.6
5,133,559 - Pf6N2E2_4402 0.28 +0.3
5,133,559 - Pf6N2E2_4402 0.28 +0.1
5,133,571 - Pf6N2E2_4402 0.28 +0.6
5,133,615 + Pf6N2E2_4402 0.31 -0.1
5,133,615 + Pf6N2E2_4402 0.31 -1.5
5,133,615 + Pf6N2E2_4402 0.31 -1.3
5,133,615 + Pf6N2E2_4402 0.31 -0.6
5,133,615 + Pf6N2E2_4402 0.31 -0.2
5,133,616 - Pf6N2E2_4402 0.31 +0.6
5,133,616 - Pf6N2E2_4402 0.31 -0.4
5,133,616 - Pf6N2E2_4402 0.31 -0.1
5,133,616 - Pf6N2E2_4402 0.31 -0.4
5,133,616 - Pf6N2E2_4402 0.31 -0.1
5,133,616 - Pf6N2E2_4402 0.31 +0.3
5,133,616 - Pf6N2E2_4402 0.31 -0.2
5,133,616 - Pf6N2E2_4402 0.31 -0.1
5,133,616 - Pf6N2E2_4402 0.31 +0.8
5,133,616 - Pf6N2E2_4402 0.31 +0.2
5,133,619 + Pf6N2E2_4402 0.31 +0.3
5,133,619 + Pf6N2E2_4402 0.31 -0.6
5,133,619 + Pf6N2E2_4402 0.31 +0.2
5,133,619 + Pf6N2E2_4402 0.31 +0.7
5,133,620 - Pf6N2E2_4402 0.31 +0.4
5,133,620 - Pf6N2E2_4402 0.31 +0.2
5,133,630 + Pf6N2E2_4402 0.31 +0.4
5,133,631 - Pf6N2E2_4402 0.31 +0.4

Or see this region's nucleotide sequence