Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3242

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3241 and Pf6N2E2_3242 are separated by 509 nucleotidesPf6N2E2_3242 and Pf6N2E2_3243 are separated by 25 nucleotides Pf6N2E2_3241 - Transcriptional regulator, LuxR family, at 3,745,442 to 3,748,033 _3241 Pf6N2E2_3242 - FIG002188: hypothetical protein, at 3,748,543 to 3,749,907 _3242 Pf6N2E2_3243 - FIG067310: hypothetical protein, at 3,749,933 to 3,751,795 _3243 Position (kb) 3748 3749 3750Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3747.718 kb on - strand, within Pf6N2E2_3241at 3747.755 kb on + strand, within Pf6N2E2_3241at 3747.755 kb on + strand, within Pf6N2E2_3241at 3747.756 kb on - strand, within Pf6N2E2_3241at 3747.756 kb on - strand, within Pf6N2E2_3241at 3748.081 kb on + strandat 3748.081 kb on + strandat 3748.082 kb on - strandat 3748.128 kb on - strandat 3748.190 kb on + strandat 3748.191 kb on - strandat 3748.234 kb on + strandat 3748.246 kb on + strandat 3748.246 kb on + strandat 3748.246 kb on + strandat 3748.247 kb on - strandat 3748.247 kb on - strandat 3748.261 kb on + strandat 3748.261 kb on + strandat 3748.262 kb on - strandat 3748.272 kb on - strandat 3748.282 kb on + strandat 3748.282 kb on + strandat 3748.282 kb on + strandat 3748.282 kb on + strandat 3748.387 kb on + strandat 3748.387 kb on + strandat 3748.387 kb on + strandat 3748.387 kb on + strandat 3748.388 kb on - strandat 3748.613 kb on + strandat 3748.613 kb on + strandat 3748.614 kb on - strandat 3748.673 kb on + strandat 3748.674 kb on - strandat 3748.691 kb on + strand, within Pf6N2E2_3242at 3748.692 kb on - strand, within Pf6N2E2_3242at 3748.712 kb on + strand, within Pf6N2E2_3242at 3748.712 kb on + strand, within Pf6N2E2_3242at 3748.713 kb on - strand, within Pf6N2E2_3242at 3748.715 kb on + strand, within Pf6N2E2_3242at 3748.715 kb on + strand, within Pf6N2E2_3242at 3748.715 kb on + strand, within Pf6N2E2_3242at 3748.716 kb on - strand, within Pf6N2E2_3242at 3748.766 kb on + strand, within Pf6N2E2_3242at 3748.766 kb on + strand, within Pf6N2E2_3242at 3748.766 kb on + strand, within Pf6N2E2_3242at 3748.767 kb on - strand, within Pf6N2E2_3242at 3748.767 kb on - strand, within Pf6N2E2_3242at 3748.826 kb on + strand, within Pf6N2E2_3242at 3748.826 kb on + strand, within Pf6N2E2_3242at 3748.826 kb on + strand, within Pf6N2E2_3242at 3748.826 kb on + strand, within Pf6N2E2_3242at 3748.826 kb on + strand, within Pf6N2E2_3242at 3748.827 kb on - strand, within Pf6N2E2_3242at 3748.827 kb on - strand, within Pf6N2E2_3242at 3748.827 kb on - strand, within Pf6N2E2_3242at 3748.827 kb on - strand, within Pf6N2E2_3242at 3748.827 kb on - strand, within Pf6N2E2_3242at 3748.827 kb on - strand, within Pf6N2E2_3242at 3748.827 kb on - strand, within Pf6N2E2_3242at 3748.827 kb on - strand, within Pf6N2E2_3242at 3748.827 kb on - strand, within Pf6N2E2_3242at 3748.827 kb on - strand, within Pf6N2E2_3242at 3748.934 kb on + strand, within Pf6N2E2_3242at 3748.961 kb on + strand, within Pf6N2E2_3242at 3748.961 kb on + strand, within Pf6N2E2_3242at 3748.962 kb on - strand, within Pf6N2E2_3242at 3748.979 kb on + strand, within Pf6N2E2_3242at 3748.979 kb on + strand, within Pf6N2E2_3242at 3748.979 kb on + strand, within Pf6N2E2_3242at 3748.979 kb on + strand, within Pf6N2E2_3242at 3748.979 kb on + strand, within Pf6N2E2_3242at 3748.979 kb on + strand, within Pf6N2E2_3242at 3748.979 kb on + strand, within Pf6N2E2_3242at 3748.979 kb on + strand, within Pf6N2E2_3242at 3748.980 kb on - strand, within Pf6N2E2_3242at 3748.980 kb on - strand, within Pf6N2E2_3242at 3748.980 kb on - strand, within Pf6N2E2_3242at 3748.980 kb on - strand, within Pf6N2E2_3242at 3748.980 kb on - strand, within Pf6N2E2_3242at 3748.980 kb on - strand, within Pf6N2E2_3242at 3748.980 kb on - strand, within Pf6N2E2_3242at 3748.980 kb on - strand, within Pf6N2E2_3242at 3748.980 kb on - strand, within Pf6N2E2_3242at 3749.012 kb on + strand, within Pf6N2E2_3242at 3749.033 kb on + strand, within Pf6N2E2_3242at 3749.033 kb on + strand, within Pf6N2E2_3242at 3749.033 kb on + strand, within Pf6N2E2_3242at 3749.033 kb on + strand, within Pf6N2E2_3242at 3749.033 kb on + strand, within Pf6N2E2_3242at 3749.033 kb on + strand, within Pf6N2E2_3242at 3749.033 kb on + strand, within Pf6N2E2_3242at 3749.033 kb on + strand, within Pf6N2E2_3242at 3749.033 kb on + strand, within Pf6N2E2_3242at 3749.033 kb on + strand, within Pf6N2E2_3242at 3749.033 kb on + strand, within Pf6N2E2_3242at 3749.034 kb on - strand, within Pf6N2E2_3242at 3749.034 kb on - strand, within Pf6N2E2_3242at 3749.034 kb on - strand, within Pf6N2E2_3242at 3749.034 kb on - strand, within Pf6N2E2_3242at 3749.055 kb on + strand, within Pf6N2E2_3242at 3749.056 kb on - strand, within Pf6N2E2_3242at 3749.090 kb on + strand, within Pf6N2E2_3242at 3749.090 kb on + strand, within Pf6N2E2_3242at 3749.135 kb on + strand, within Pf6N2E2_3242at 3749.136 kb on - strand, within Pf6N2E2_3242at 3749.237 kb on + strand, within Pf6N2E2_3242at 3749.237 kb on + strand, within Pf6N2E2_3242at 3749.237 kb on + strand, within Pf6N2E2_3242at 3749.238 kb on - strand, within Pf6N2E2_3242at 3749.238 kb on - strand, within Pf6N2E2_3242at 3749.312 kb on + strand, within Pf6N2E2_3242at 3749.324 kb on + strand, within Pf6N2E2_3242at 3749.324 kb on + strand, within Pf6N2E2_3242at 3749.369 kb on - strand, within Pf6N2E2_3242at 3749.559 kb on - strand, within Pf6N2E2_3242at 3749.603 kb on + strand, within Pf6N2E2_3242at 3749.604 kb on - strand, within Pf6N2E2_3242at 3749.630 kb on + strand, within Pf6N2E2_3242at 3749.630 kb on + strand, within Pf6N2E2_3242at 3749.630 kb on + strand, within Pf6N2E2_3242at 3749.631 kb on - strand, within Pf6N2E2_3242at 3749.681 kb on + strand, within Pf6N2E2_3242at 3749.899 kb on + strandat 3749.900 kb on - strandat 3749.907 kb on + strandat 3749.908 kb on - strandat 3749.925 kb on + strandat 3749.925 kb on + strandat 3749.925 kb on + strandat 3749.925 kb on + strandat 3749.926 kb on - strandat 3749.926 kb on - strandat 3749.926 kb on - strandat 3749.934 kb on + strandat 3749.934 kb on + strandat 3749.934 kb on + strandat 3749.934 kb on + strandat 3749.934 kb on + strandat 3749.934 kb on + strandat 3749.934 kb on + strandat 3749.935 kb on - strandat 3749.935 kb on - strandat 3749.935 kb on - strandat 3749.935 kb on - strandat 3749.935 kb on - strandat 3749.935 kb on - strandat 3749.935 kb on - strandat 3749.935 kb on - strandat 3749.979 kb on - strandat 3750.013 kb on - strandat 3750.013 kb on - strandat 3750.030 kb on + strandat 3750.030 kb on + strandat 3750.030 kb on + strandat 3750.030 kb on + strandat 3750.031 kb on - strandat 3750.031 kb on - strandat 3750.031 kb on - strandat 3750.031 kb on - strandat 3750.031 kb on - strandat 3750.042 kb on + strandat 3750.043 kb on - strandat 3750.043 kb on - strandat 3750.292 kb on + strand, within Pf6N2E2_3243at 3750.292 kb on + strand, within Pf6N2E2_3243at 3750.292 kb on + strand, within Pf6N2E2_3243at 3750.292 kb on + strand, within Pf6N2E2_3243at 3750.292 kb on + strand, within Pf6N2E2_3243at 3750.293 kb on - strand, within Pf6N2E2_3243at 3750.293 kb on - strand, within Pf6N2E2_3243at 3750.293 kb on - strand, within Pf6N2E2_3243at 3750.293 kb on - strand, within Pf6N2E2_3243at 3750.410 kb on + strand, within Pf6N2E2_3243at 3750.410 kb on + strand, within Pf6N2E2_3243at 3750.411 kb on - strand, within Pf6N2E2_3243at 3750.411 kb on - strand, within Pf6N2E2_3243at 3750.411 kb on - strand, within Pf6N2E2_3243at 3750.587 kb on - strand, within Pf6N2E2_3243at 3750.684 kb on + strand, within Pf6N2E2_3243at 3750.685 kb on - strand, within Pf6N2E2_3243at 3750.694 kb on + strand, within Pf6N2E2_3243at 3750.695 kb on - strand, within Pf6N2E2_3243at 3750.717 kb on + strand, within Pf6N2E2_3243at 3750.727 kb on + strand, within Pf6N2E2_3243at 3750.727 kb on + strand, within Pf6N2E2_3243at 3750.775 kb on - strand, within Pf6N2E2_3243at 3750.775 kb on - strand, within Pf6N2E2_3243at 3750.825 kb on + strand, within Pf6N2E2_3243at 3750.825 kb on + strand, within Pf6N2E2_3243at 3750.825 kb on + strand, within Pf6N2E2_3243at 3750.825 kb on + strand, within Pf6N2E2_3243at 3750.826 kb on - strand, within Pf6N2E2_3243at 3750.826 kb on - strand, within Pf6N2E2_3243at 3750.826 kb on - strand, within Pf6N2E2_3243at 3750.826 kb on - strand, within Pf6N2E2_3243at 3750.826 kb on - strand, within Pf6N2E2_3243at 3750.837 kb on + strand, within Pf6N2E2_3243at 3750.837 kb on + strand, within Pf6N2E2_3243at 3750.837 kb on + strand, within Pf6N2E2_3243at 3750.837 kb on + strand, within Pf6N2E2_3243at 3750.838 kb on - strand, within Pf6N2E2_3243at 3750.838 kb on - strand, within Pf6N2E2_3243at 3750.838 kb on - strand, within Pf6N2E2_3243at 3750.873 kb on + strand, within Pf6N2E2_3243at 3750.873 kb on + strand, within Pf6N2E2_3243at 3750.873 kb on + strand, within Pf6N2E2_3243at 3750.873 kb on + strand, within Pf6N2E2_3243at 3750.873 kb on + strand, within Pf6N2E2_3243

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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3,747,718 - Pf6N2E2_3241 0.88 -3.6
3,747,755 + Pf6N2E2_3241 0.89 -4.3
3,747,755 + Pf6N2E2_3241 0.89 -3.3
3,747,756 - Pf6N2E2_3241 0.89 -2.8
3,747,756 - Pf6N2E2_3241 0.89 -1.9
3,748,081 + -4.1
3,748,081 + -2.0
3,748,082 - -2.4
3,748,128 - -3.9
3,748,190 + -2.1
3,748,191 - +0.2
3,748,234 + -2.7
3,748,246 + -2.5
3,748,246 + -2.6
3,748,246 + -3.9
3,748,247 - +0.3
3,748,247 - +0.0
3,748,261 + -2.3
3,748,261 + -1.9
3,748,262 - +0.6
3,748,272 - -0.1
3,748,282 + -2.7
3,748,282 + -1.8
3,748,282 + -4.1
3,748,282 + -1.8
3,748,387 + -0.4
3,748,387 + -0.6
3,748,387 + -1.9
3,748,387 + -1.0
3,748,388 - +0.6
3,748,613 + -0.9
3,748,613 + -1.8
3,748,614 - -1.9
3,748,673 + -4.2
3,748,674 - -1.9
3,748,691 + Pf6N2E2_3242 0.11 -2.1
3,748,692 - Pf6N2E2_3242 0.11 -3.9
3,748,712 + Pf6N2E2_3242 0.12 -1.8
3,748,712 + Pf6N2E2_3242 0.12 -3.0
3,748,713 - Pf6N2E2_3242 0.12 +0.1
3,748,715 + Pf6N2E2_3242 0.13 -3.0
3,748,715 + Pf6N2E2_3242 0.13 +0.1
3,748,715 + Pf6N2E2_3242 0.13 -3.4
3,748,716 - Pf6N2E2_3242 0.13 -2.7
3,748,766 + Pf6N2E2_3242 0.16 -1.2
3,748,766 + Pf6N2E2_3242 0.16 -3.4
3,748,766 + Pf6N2E2_3242 0.16 -2.9
3,748,767 - Pf6N2E2_3242 0.16 -3.7
3,748,767 - Pf6N2E2_3242 0.16 -4.4
3,748,826 + Pf6N2E2_3242 0.21 -3.5
3,748,826 + Pf6N2E2_3242 0.21 -3.3
3,748,826 + Pf6N2E2_3242 0.21 -4.3
3,748,826 + Pf6N2E2_3242 0.21 -2.4
3,748,826 + Pf6N2E2_3242 0.21 -3.0
3,748,827 - Pf6N2E2_3242 0.21 -2.2
3,748,827 - Pf6N2E2_3242 0.21 -3.7
3,748,827 - Pf6N2E2_3242 0.21 -2.6
3,748,827 - Pf6N2E2_3242 0.21 -4.2
3,748,827 - Pf6N2E2_3242 0.21 -2.4
3,748,827 - Pf6N2E2_3242 0.21 -3.1
3,748,827 - Pf6N2E2_3242 0.21 -3.4
3,748,827 - Pf6N2E2_3242 0.21 -3.8
3,748,827 - Pf6N2E2_3242 0.21 -3.9
3,748,827 - Pf6N2E2_3242 0.21 -2.5
3,748,934 + Pf6N2E2_3242 0.29 -2.3
3,748,961 + Pf6N2E2_3242 0.31 -2.9
3,748,961 + Pf6N2E2_3242 0.31 -2.0
3,748,962 - Pf6N2E2_3242 0.31 -4.3
3,748,979 + Pf6N2E2_3242 0.32 -3.4
3,748,979 + Pf6N2E2_3242 0.32 -3.4
3,748,979 + Pf6N2E2_3242 0.32 -4.3
3,748,979 + Pf6N2E2_3242 0.32 -2.4
3,748,979 + Pf6N2E2_3242 0.32 -2.3
3,748,979 + Pf6N2E2_3242 0.32 -3.8
3,748,979 + Pf6N2E2_3242 0.32 -3.0
3,748,979 + Pf6N2E2_3242 0.32 -2.8
3,748,980 - Pf6N2E2_3242 0.32 -4.8
3,748,980 - Pf6N2E2_3242 0.32 -4.5
3,748,980 - Pf6N2E2_3242 0.32 -0.0
3,748,980 - Pf6N2E2_3242 0.32 -2.4
3,748,980 - Pf6N2E2_3242 0.32 -2.4
3,748,980 - Pf6N2E2_3242 0.32 -2.3
3,748,980 - Pf6N2E2_3242 0.32 -3.5
3,748,980 - Pf6N2E2_3242 0.32 -3.2
3,748,980 - Pf6N2E2_3242 0.32 -1.0
3,749,012 + Pf6N2E2_3242 0.34 -3.3
3,749,033 + Pf6N2E2_3242 0.36 -0.9
3,749,033 + Pf6N2E2_3242 0.36 -2.9
3,749,033 + Pf6N2E2_3242 0.36 -3.8
3,749,033 + Pf6N2E2_3242 0.36 -0.9
3,749,033 + Pf6N2E2_3242 0.36 -1.2
3,749,033 + Pf6N2E2_3242 0.36 -2.3
3,749,033 + Pf6N2E2_3242 0.36 -1.2
3,749,033 + Pf6N2E2_3242 0.36 -2.0
3,749,033 + Pf6N2E2_3242 0.36 -2.7
3,749,033 + Pf6N2E2_3242 0.36 -2.9
3,749,033 + Pf6N2E2_3242 0.36 -3.3
3,749,034 - Pf6N2E2_3242 0.36 -3.0
3,749,034 - Pf6N2E2_3242 0.36 -3.0
3,749,034 - Pf6N2E2_3242 0.36 -4.4
3,749,034 - Pf6N2E2_3242 0.36 -1.4
3,749,055 + Pf6N2E2_3242 0.38 -2.2
3,749,056 - Pf6N2E2_3242 0.38 -3.3
3,749,090 + Pf6N2E2_3242 0.40 -0.9
3,749,090 + Pf6N2E2_3242 0.40 -3.4
3,749,135 + Pf6N2E2_3242 0.43 -1.9
3,749,136 - Pf6N2E2_3242 0.43 -3.3
3,749,237 + Pf6N2E2_3242 0.51 -3.0
3,749,237 + Pf6N2E2_3242 0.51 -2.8
3,749,237 + Pf6N2E2_3242 0.51 -2.9
3,749,238 - Pf6N2E2_3242 0.51 -2.0
3,749,238 - Pf6N2E2_3242 0.51 -3.6
3,749,312 + Pf6N2E2_3242 0.56 -3.3
3,749,324 + Pf6N2E2_3242 0.57 -2.7
3,749,324 + Pf6N2E2_3242 0.57 -4.1
3,749,369 - Pf6N2E2_3242 0.61 -1.1
3,749,559 - Pf6N2E2_3242 0.74 -2.7
3,749,603 + Pf6N2E2_3242 0.78 -2.2
3,749,604 - Pf6N2E2_3242 0.78 -2.6
3,749,630 + Pf6N2E2_3242 0.80 -2.4
3,749,630 + Pf6N2E2_3242 0.80 -3.9
3,749,630 + Pf6N2E2_3242 0.80 -2.9
3,749,631 - Pf6N2E2_3242 0.80 -4.3
3,749,681 + Pf6N2E2_3242 0.83 -3.7
3,749,899 + -0.3
3,749,900 - -2.2
3,749,907 + -3.8
3,749,908 - -4.5
3,749,925 + -2.6
3,749,925 + -2.1
3,749,925 + -3.6
3,749,925 + -2.2
3,749,926 - -1.2
3,749,926 - -2.1
3,749,926 - -4.1
3,749,934 + -1.2
3,749,934 + -2.4
3,749,934 + -3.2
3,749,934 + -4.5
3,749,934 + -2.9
3,749,934 + -2.5
3,749,934 + -2.9
3,749,935 - -0.6
3,749,935 - -0.9
3,749,935 - -1.4
3,749,935 - -3.1
3,749,935 - -1.5
3,749,935 - -0.6
3,749,935 - +2.0
3,749,935 - -0.9
3,749,979 - -2.8
3,750,013 - -0.9
3,750,013 - -1.5
3,750,030 + -3.3
3,750,030 + -3.8
3,750,030 + -3.2
3,750,030 + -2.6
3,750,031 - -2.7
3,750,031 - -3.4
3,750,031 - -3.2
3,750,031 - -3.5
3,750,031 - -1.9
3,750,042 + -3.4
3,750,043 - -1.8
3,750,043 - -2.8
3,750,292 + Pf6N2E2_3243 0.19 -2.8
3,750,292 + Pf6N2E2_3243 0.19 -3.6
3,750,292 + Pf6N2E2_3243 0.19 +0.6
3,750,292 + Pf6N2E2_3243 0.19 -4.4
3,750,292 + Pf6N2E2_3243 0.19 -3.0
3,750,293 - Pf6N2E2_3243 0.19 -2.4
3,750,293 - Pf6N2E2_3243 0.19 +0.5
3,750,293 - Pf6N2E2_3243 0.19 -4.4
3,750,293 - Pf6N2E2_3243 0.19 -3.9
3,750,410 + Pf6N2E2_3243 0.26 -1.9
3,750,410 + Pf6N2E2_3243 0.26 -4.1
3,750,411 - Pf6N2E2_3243 0.26 -1.7
3,750,411 - Pf6N2E2_3243 0.26 -2.2
3,750,411 - Pf6N2E2_3243 0.26 -1.8
3,750,587 - Pf6N2E2_3243 0.35 -2.6
3,750,684 + Pf6N2E2_3243 0.40 -3.1
3,750,685 - Pf6N2E2_3243 0.40 -3.9
3,750,694 + Pf6N2E2_3243 0.41 -1.4
3,750,695 - Pf6N2E2_3243 0.41 -3.2
3,750,717 + Pf6N2E2_3243 0.42 -2.7
3,750,727 + Pf6N2E2_3243 0.43 -2.7
3,750,727 + Pf6N2E2_3243 0.43 -1.9
3,750,775 - Pf6N2E2_3243 0.45 -2.7
3,750,775 - Pf6N2E2_3243 0.45 -2.3
3,750,825 + Pf6N2E2_3243 0.48 -1.4
3,750,825 + Pf6N2E2_3243 0.48 -4.3
3,750,825 + Pf6N2E2_3243 0.48 -3.1
3,750,825 + Pf6N2E2_3243 0.48 -4.2
3,750,826 - Pf6N2E2_3243 0.48 -3.2
3,750,826 - Pf6N2E2_3243 0.48 -3.9
3,750,826 - Pf6N2E2_3243 0.48 -2.3
3,750,826 - Pf6N2E2_3243 0.48 -2.9
3,750,826 - Pf6N2E2_3243 0.48 -2.0
3,750,837 + Pf6N2E2_3243 0.49 -2.2
3,750,837 + Pf6N2E2_3243 0.49 -4.1
3,750,837 + Pf6N2E2_3243 0.49 -3.1
3,750,837 + Pf6N2E2_3243 0.49 -3.7
3,750,838 - Pf6N2E2_3243 0.49 -3.4
3,750,838 - Pf6N2E2_3243 0.49 -3.3
3,750,838 - Pf6N2E2_3243 0.49 -3.6
3,750,873 + Pf6N2E2_3243 0.50 -4.6
3,750,873 + Pf6N2E2_3243 0.50 -3.0
3,750,873 + Pf6N2E2_3243 0.50 -3.8
3,750,873 + Pf6N2E2_3243 0.50 -0.4
3,750,873 + Pf6N2E2_3243 0.50 -3.7

Or see this region's nucleotide sequence