Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00870

Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Vitamin FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS00865 and MMJJ_RS00870 are separated by 21 nucleotidesMMJJ_RS00870 and MMJJ_RS00875 are separated by 16 nucleotidesMMJJ_RS00875 and MMJJ_RS00880 are separated by 358 nucleotides MMJJ_RS00865: MMJJ_RS00865 - Ni/Fe hydrogenase subunit alpha, at 165,676 to 167,091 _RS00865 MMJJ_RS00870: MMJJ_RS00870 - F420-nonreducing hydrogenase, at 167,113 to 168,015 _RS00870 MMJJ_RS00875: MMJJ_RS00875 - hydrogenase iron-sulfur subunit, at 168,032 to 168,454 _RS00875 MMJJ_RS00880: MMJJ_RS00880 - coenzyme F420 hydrogenase subunit alpha, at 168,813 to 170,045 _RS00880 Position (kb) 167 168 169Strain fitness (log2 ratio) -3 -2 -1 0 1at 166.167 kb on + strand, within MMJJ_RS00865at 166.179 kb on - strand, within MMJJ_RS00865at 166.180 kb on + strand, within MMJJ_RS00865at 166.180 kb on + strand, within MMJJ_RS00865at 166.185 kb on - strand, within MMJJ_RS00865at 166.185 kb on - strand, within MMJJ_RS00865at 166.201 kb on - strand, within MMJJ_RS00865at 166.201 kb on - strand, within MMJJ_RS00865at 166.201 kb on - strand, within MMJJ_RS00865at 166.201 kb on - strand, within MMJJ_RS00865at 166.201 kb on - strand, within MMJJ_RS00865at 166.202 kb on + strand, within MMJJ_RS00865at 166.202 kb on + strand, within MMJJ_RS00865at 166.310 kb on - strand, within MMJJ_RS00865at 166.315 kb on - strand, within MMJJ_RS00865at 166.315 kb on - strand, within MMJJ_RS00865at 166.316 kb on + strand, within MMJJ_RS00865at 166.319 kb on - strand, within MMJJ_RS00865at 166.385 kb on - strand, within MMJJ_RS00865at 166.386 kb on + strand, within MMJJ_RS00865at 166.389 kb on - strand, within MMJJ_RS00865at 166.437 kb on + strand, within MMJJ_RS00865at 166.477 kb on - strand, within MMJJ_RS00865at 166.492 kb on - strand, within MMJJ_RS00865at 166.516 kb on - strand, within MMJJ_RS00865at 166.517 kb on + strand, within MMJJ_RS00865at 166.517 kb on + strand, within MMJJ_RS00865at 166.597 kb on - strand, within MMJJ_RS00865at 166.608 kb on - strand, within MMJJ_RS00865at 166.609 kb on + strand, within MMJJ_RS00865at 166.672 kb on - strand, within MMJJ_RS00865at 166.673 kb on + strand, within MMJJ_RS00865at 166.744 kb on - strand, within MMJJ_RS00865at 167.092 kb on - strandat 167.102 kb on - strandat 167.293 kb on + strand, within MMJJ_RS00870at 167.311 kb on + strand, within MMJJ_RS00870at 167.335 kb on - strand, within MMJJ_RS00870at 167.496 kb on - strand, within MMJJ_RS00870at 167.535 kb on - strand, within MMJJ_RS00870at 167.535 kb on - strand, within MMJJ_RS00870at 167.536 kb on + strand, within MMJJ_RS00870at 167.536 kb on + strand, within MMJJ_RS00870at 167.540 kb on + strand, within MMJJ_RS00870at 167.540 kb on + strand, within MMJJ_RS00870at 167.540 kb on + strand, within MMJJ_RS00870at 167.583 kb on - strand, within MMJJ_RS00870at 167.583 kb on - strand, within MMJJ_RS00870at 167.655 kb on - strand, within MMJJ_RS00870at 167.693 kb on - strand, within MMJJ_RS00870at 167.725 kb on - strand, within MMJJ_RS00870at 167.726 kb on + strand, within MMJJ_RS00870at 167.731 kb on + strand, within MMJJ_RS00870at 167.866 kb on + strand, within MMJJ_RS00870at 167.950 kb on - strandat 167.950 kb on - strandat 167.965 kb on - strandat 168.001 kb on + strandat 168.001 kb on + strandat 168.001 kb on + strandat 168.001 kb on + strandat 168.010 kb on - strandat 168.015 kb on - strandat 168.015 kb on - strandat 168.029 kb on - strandat 168.029 kb on - strandat 168.030 kb on + strandat 168.232 kb on + strand, within MMJJ_RS00875at 168.262 kb on - strand, within MMJJ_RS00875at 168.301 kb on - strand, within MMJJ_RS00875at 168.302 kb on + strand, within MMJJ_RS00875at 168.302 kb on + strand, within MMJJ_RS00875at 168.339 kb on + strand, within MMJJ_RS00875at 168.339 kb on + strand, within MMJJ_RS00875at 168.341 kb on - strand, within MMJJ_RS00875at 168.342 kb on + strand, within MMJJ_RS00875at 168.342 kb on + strand, within MMJJ_RS00875at 168.348 kb on + strand, within MMJJ_RS00875at 168.371 kb on + strand, within MMJJ_RS00875at 168.386 kb on + strand, within MMJJ_RS00875at 168.399 kb on - strand, within MMJJ_RS00875at 168.399 kb on - strand, within MMJJ_RS00875at 168.399 kb on - strand, within MMJJ_RS00875at 168.400 kb on + strand, within MMJJ_RS00875at 168.400 kb on + strand, within MMJJ_RS00875at 168.400 kb on + strand, within MMJJ_RS00875at 168.400 kb on + strand, within MMJJ_RS00875at 168.403 kb on - strand, within MMJJ_RS00875at 168.404 kb on + strand, within MMJJ_RS00875at 168.705 kb on - strandat 168.706 kb on + strandat 168.706 kb on + strandat 168.708 kb on + strandat 168.803 kb on + strandat 168.832 kb on - strandat 168.840 kb on + strandat 168.908 kb on - strandat 168.909 kb on + strandat 168.912 kb on - strandat 168.912 kb on - strandat 168.912 kb on - strandat 168.913 kb on + strandat 168.932 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Vitamin FREE
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166,167 + MMJJ_RS00865 0.35 -0.2
166,179 - MMJJ_RS00865 0.36 -1.4
166,180 + MMJJ_RS00865 0.36 -0.5
166,180 + MMJJ_RS00865 0.36 +0.3
166,185 - MMJJ_RS00865 0.36 -0.9
166,185 - MMJJ_RS00865 0.36 -1.2
166,201 - MMJJ_RS00865 0.37 +0.7
166,201 - MMJJ_RS00865 0.37 +0.1
166,201 - MMJJ_RS00865 0.37 +0.3
166,201 - MMJJ_RS00865 0.37 -0.1
166,201 - MMJJ_RS00865 0.37 +0.3
166,202 + MMJJ_RS00865 0.37 +0.6
166,202 + MMJJ_RS00865 0.37 -0.3
166,310 - MMJJ_RS00865 0.45 -1.4
166,315 - MMJJ_RS00865 0.45 -0.4
166,315 - MMJJ_RS00865 0.45 +0.4
166,316 + MMJJ_RS00865 0.45 -0.6
166,319 - MMJJ_RS00865 0.45 +0.8
166,385 - MMJJ_RS00865 0.50 +0.4
166,386 + MMJJ_RS00865 0.50 -0.9
166,389 - MMJJ_RS00865 0.50 +0.6
166,437 + MMJJ_RS00865 0.54 +0.5
166,477 - MMJJ_RS00865 0.57 -0.6
166,492 - MMJJ_RS00865 0.58 +0.7
166,516 - MMJJ_RS00865 0.59 +0.4
166,517 + MMJJ_RS00865 0.59 -0.6
166,517 + MMJJ_RS00865 0.59 +0.1
166,597 - MMJJ_RS00865 0.65 -0.3
166,608 - MMJJ_RS00865 0.66 -2.3
166,609 + MMJJ_RS00865 0.66 +1.3
166,672 - MMJJ_RS00865 0.70 +0.2
166,673 + MMJJ_RS00865 0.70 -2.7
166,744 - MMJJ_RS00865 0.75 +0.1
167,092 - +0.6
167,102 - +0.2
167,293 + MMJJ_RS00870 0.20 +0.8
167,311 + MMJJ_RS00870 0.22 -0.7
167,335 - MMJJ_RS00870 0.25 -0.1
167,496 - MMJJ_RS00870 0.42 +0.3
167,535 - MMJJ_RS00870 0.47 -0.8
167,535 - MMJJ_RS00870 0.47 -0.7
167,536 + MMJJ_RS00870 0.47 +1.3
167,536 + MMJJ_RS00870 0.47 -0.1
167,540 + MMJJ_RS00870 0.47 +0.4
167,540 + MMJJ_RS00870 0.47 +0.1
167,540 + MMJJ_RS00870 0.47 -0.1
167,583 - MMJJ_RS00870 0.52 -0.3
167,583 - MMJJ_RS00870 0.52 +0.3
167,655 - MMJJ_RS00870 0.60 +0.5
167,693 - MMJJ_RS00870 0.64 +1.5
167,725 - MMJJ_RS00870 0.68 -0.5
167,726 + MMJJ_RS00870 0.68 -1.1
167,731 + MMJJ_RS00870 0.68 +1.1
167,866 + MMJJ_RS00870 0.83 +0.6
167,950 - +1.4
167,950 - -1.3
167,965 - -0.1
168,001 + +0.3
168,001 + +0.8
168,001 + -1.0
168,001 + -0.6
168,010 - -0.7
168,015 - -1.0
168,015 - +1.0
168,029 - -0.1
168,029 - +0.5
168,030 + +0.3
168,232 + MMJJ_RS00875 0.47 -0.1
168,262 - MMJJ_RS00875 0.54 -0.9
168,301 - MMJJ_RS00875 0.64 +0.3
168,302 + MMJJ_RS00875 0.64 +1.6
168,302 + MMJJ_RS00875 0.64 -0.8
168,339 + MMJJ_RS00875 0.73 +0.6
168,339 + MMJJ_RS00875 0.73 +0.5
168,341 - MMJJ_RS00875 0.73 -0.6
168,342 + MMJJ_RS00875 0.73 -0.3
168,342 + MMJJ_RS00875 0.73 -3.2
168,348 + MMJJ_RS00875 0.75 +0.4
168,371 + MMJJ_RS00875 0.80 +0.3
168,386 + MMJJ_RS00875 0.84 +0.6
168,399 - MMJJ_RS00875 0.87 +0.3
168,399 - MMJJ_RS00875 0.87 -0.8
168,399 - MMJJ_RS00875 0.87 +0.5
168,400 + MMJJ_RS00875 0.87 -0.0
168,400 + MMJJ_RS00875 0.87 -0.8
168,400 + MMJJ_RS00875 0.87 +0.2
168,400 + MMJJ_RS00875 0.87 +0.8
168,403 - MMJJ_RS00875 0.88 -1.9
168,404 + MMJJ_RS00875 0.88 +0.5
168,705 - -0.4
168,706 + -0.3
168,706 + -0.7
168,708 + +0.8
168,803 + -0.6
168,832 - -0.5
168,840 + -0.6
168,908 - -0.8
168,909 + -0.9
168,912 - +0.8
168,912 - -0.3
168,912 - -0.0
168,913 + -0.1
168,932 - -0.6

Or see this region's nucleotide sequence