Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4570 and Ac3H11_4571 overlap by 4 nucleotides
Ac3H11_4570 - Heavy metal RND efflux outer membrane protein, CzcC family, at 166,269 to 167,336
_4570
Ac3H11_4571 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 167,333 to 167,965
_4571
Position (kb) 166
167
168 Strain fitness (log2 ratio) -2
-1
0
1
2 at 165.281 kb on + strand at 165.281 kb on + strand at 165.352 kb on - strand at 165.352 kb on - strand at 165.352 kb on - strand at 165.352 kb on - strand at 165.390 kb on + strand at 165.390 kb on + strand at 165.390 kb on + strand at 165.396 kb on + strand at 165.396 kb on + strand at 165.396 kb on + strand at 165.396 kb on + strand at 165.402 kb on + strand at 165.402 kb on + strand at 165.456 kb on + strand at 165.456 kb on + strand at 165.525 kb on + strand at 165.538 kb on + strand at 165.539 kb on - strand at 165.539 kb on - strand at 165.539 kb on - strand at 165.545 kb on - strand at 165.559 kb on + strand at 165.559 kb on + strand at 165.562 kb on + strand at 165.562 kb on + strand at 165.562 kb on + strand at 165.562 kb on + strand at 165.562 kb on + strand at 165.562 kb on + strand at 165.976 kb on + strand at 165.976 kb on + strand at 165.979 kb on + strand at 165.979 kb on + strand at 166.136 kb on + strand at 166.257 kb on - strand at 166.435 kb on + strand, within Ac3H11_4570 at 166.583 kb on - strand, within Ac3H11_4570 at 166.583 kb on - strand, within Ac3H11_4570 at 166.726 kb on + strand, within Ac3H11_4570 at 166.726 kb on + strand, within Ac3H11_4570 at 167.042 kb on - strand, within Ac3H11_4570 at 167.042 kb on - strand, within Ac3H11_4570 at 167.246 kb on + strand at 167.247 kb on - strand at 167.349 kb on + strand at 167.349 kb on + strand at 167.349 kb on + strand at 167.349 kb on + strand at 167.349 kb on + strand at 167.350 kb on - strand at 167.350 kb on - strand at 167.373 kb on + strand at 167.373 kb on + strand at 167.373 kb on + strand at 167.373 kb on + strand at 167.373 kb on + strand at 167.373 kb on + strand at 167.373 kb on + strand at 167.374 kb on - strand at 167.374 kb on - strand at 167.374 kb on - strand at 167.413 kb on + strand, within Ac3H11_4571 at 167.423 kb on + strand, within Ac3H11_4571 at 167.423 kb on + strand, within Ac3H11_4571 at 167.423 kb on + strand, within Ac3H11_4571 at 167.423 kb on + strand, within Ac3H11_4571 at 167.424 kb on - strand, within Ac3H11_4571 at 167.424 kb on - strand, within Ac3H11_4571 at 167.424 kb on - strand, within Ac3H11_4571 at 167.424 kb on - strand, within Ac3H11_4571 at 167.748 kb on + strand, within Ac3H11_4571 at 168.101 kb on + strand at 168.101 kb on + strand at 168.101 kb on + strand at 168.102 kb on - strand at 168.102 kb on - strand at 168.102 kb on - strand at 168.102 kb on - strand at 168.102 kb on - strand at 168.102 kb on - strand at 168.102 kb on - strand at 168.102 kb on - strand at 168.102 kb on - strand at 168.102 kb on - strand at 168.102 kb on - strand at 168.102 kb on - strand at 168.193 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 165,281 + +1.0 165,281 + -1.8 165,352 - -0.2 165,352 - -0.0 165,352 - +0.2 165,352 - +0.4 165,390 + -0.2 165,390 + -0.3 165,390 + -0.7 165,396 + +0.6 165,396 + +0.7 165,396 + +0.8 165,396 + -0.1 165,402 + +0.3 165,402 + +0.1 165,456 + -0.3 165,456 + -0.2 165,525 + -0.5 165,538 + -0.8 165,539 - +0.0 165,539 - -1.8 165,539 - -0.3 165,545 - -0.1 165,559 + -0.2 165,559 + -0.5 165,562 + -0.2 165,562 + +1.4 165,562 + -0.2 165,562 + -0.9 165,562 + +2.3 165,562 + -0.6 165,976 + +0.8 165,976 + +0.1 165,979 + -0.5 165,979 + -0.5 166,136 + -1.6 166,257 - -0.1 166,435 + Ac3H11_4570 0.16 +0.6 166,583 - Ac3H11_4570 0.29 +0.6 166,583 - Ac3H11_4570 0.29 +0.9 166,726 + Ac3H11_4570 0.43 +0.3 166,726 + Ac3H11_4570 0.43 +0.4 167,042 - Ac3H11_4570 0.72 -0.1 167,042 - Ac3H11_4570 0.72 +0.6 167,246 + +0.1 167,247 - -0.5 167,349 + -1.1 167,349 + -0.1 167,349 + -0.0 167,349 + +0.3 167,349 + -0.6 167,350 - -1.1 167,350 - +0.6 167,373 + +0.4 167,373 + -0.1 167,373 + +0.3 167,373 + -0.0 167,373 + -0.1 167,373 + -0.1 167,373 + +0.2 167,374 - +0.7 167,374 - -0.1 167,374 - +1.0 167,413 + Ac3H11_4571 0.13 -0.7 167,423 + Ac3H11_4571 0.14 -1.2 167,423 + Ac3H11_4571 0.14 -0.3 167,423 + Ac3H11_4571 0.14 +0.1 167,423 + Ac3H11_4571 0.14 +0.7 167,424 - Ac3H11_4571 0.14 -0.1 167,424 - Ac3H11_4571 0.14 +0.4 167,424 - Ac3H11_4571 0.14 -0.9 167,424 - Ac3H11_4571 0.14 +0.2 167,748 + Ac3H11_4571 0.66 -0.1 168,101 + -0.2 168,101 + +0.3 168,101 + -0.9 168,102 - +0.5 168,102 - -1.5 168,102 - -0.6 168,102 - +1.9 168,102 - -1.1 168,102 - +0.2 168,102 - -0.3 168,102 - +0.8 168,102 - -0.5 168,102 - +0.0 168,102 - -0.8 168,102 - -0.5 168,193 - +0.0
Or see this region's nucleotide sequence