Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4157

Experiment: casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_4155 and Ac3H11_4156 overlap by 4 nucleotidesAc3H11_4156 and Ac3H11_4157 are separated by 53 nucleotidesAc3H11_4157 and Ac3H11_4158 are separated by 121 nucleotidesAc3H11_4158 and Ac3H11_4159 are separated by 49 nucleotides Ac3H11_4155 - Pirin-related protein, at 409,282 to 410,199 _4155 Ac3H11_4156 - OsmC family protein, at 410,196 to 410,603 _4156 Ac3H11_4157 - Multimeric flavodoxin WrbA, at 410,657 to 411,211 _4157 Ac3H11_4158 - putative membrane protein, at 411,333 to 411,746 _4158 Ac3H11_4159 - Pirin, at 411,796 to 412,497 _4159 Position (kb) 410 411 412Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 409.850 kb on + strand, within Ac3H11_4155at 409.850 kb on + strand, within Ac3H11_4155at 409.850 kb on + strand, within Ac3H11_4155at 409.850 kb on + strand, within Ac3H11_4155at 409.850 kb on + strand, within Ac3H11_4155at 409.850 kb on + strand, within Ac3H11_4155at 409.851 kb on - strand, within Ac3H11_4155at 409.851 kb on - strand, within Ac3H11_4155at 409.851 kb on - strand, within Ac3H11_4155at 409.851 kb on - strand, within Ac3H11_4155at 409.991 kb on + strand, within Ac3H11_4155at 409.991 kb on + strand, within Ac3H11_4155at 409.991 kb on + strand, within Ac3H11_4155at 409.991 kb on + strand, within Ac3H11_4155at 409.991 kb on + strand, within Ac3H11_4155at 409.991 kb on + strand, within Ac3H11_4155at 409.991 kb on + strand, within Ac3H11_4155at 409.992 kb on - strand, within Ac3H11_4155at 409.992 kb on - strand, within Ac3H11_4155at 409.992 kb on - strand, within Ac3H11_4155at 409.992 kb on - strand, within Ac3H11_4155at 409.992 kb on - strand, within Ac3H11_4155at 409.992 kb on - strand, within Ac3H11_4155at 409.992 kb on - strand, within Ac3H11_4155at 410.425 kb on + strand, within Ac3H11_4156at 410.425 kb on + strand, within Ac3H11_4156at 410.426 kb on - strand, within Ac3H11_4156at 410.470 kb on + strand, within Ac3H11_4156at 410.470 kb on + strand, within Ac3H11_4156at 410.470 kb on + strand, within Ac3H11_4156at 410.470 kb on + strand, within Ac3H11_4156at 410.470 kb on + strand, within Ac3H11_4156at 410.470 kb on + strand, within Ac3H11_4156at 410.470 kb on + strand, within Ac3H11_4156at 410.471 kb on - strand, within Ac3H11_4156at 410.471 kb on - strand, within Ac3H11_4156at 410.471 kb on - strand, within Ac3H11_4156at 410.658 kb on + strandat 410.658 kb on + strandat 410.659 kb on - strandat 410.659 kb on - strandat 410.889 kb on + strand, within Ac3H11_4157at 410.889 kb on + strand, within Ac3H11_4157at 410.890 kb on - strand, within Ac3H11_4157at 410.890 kb on - strand, within Ac3H11_4157at 410.890 kb on - strand, within Ac3H11_4157at 410.890 kb on - strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.034 kb on - strand, within Ac3H11_4157at 411.034 kb on - strand, within Ac3H11_4157at 411.034 kb on - strand, within Ac3H11_4157at 411.034 kb on - strand, within Ac3H11_4157at 411.034 kb on - strand, within Ac3H11_4157at 411.034 kb on - strand, within Ac3H11_4157at 411.034 kb on - strand, within Ac3H11_4157at 411.034 kb on - strand, within Ac3H11_4157at 411.034 kb on - strand, within Ac3H11_4157at 411.034 kb on - strand, within Ac3H11_4157at 411.034 kb on - strand, within Ac3H11_4157at 411.169 kb on + strandat 411.169 kb on + strandat 411.169 kb on + strandat 411.170 kb on - strandat 411.170 kb on - strandat 411.189 kb on + strandat 411.261 kb on + strandat 411.261 kb on + strandat 411.472 kb on + strand, within Ac3H11_4158at 411.473 kb on - strand, within Ac3H11_4158at 411.634 kb on + strand, within Ac3H11_4158at 411.634 kb on + strand, within Ac3H11_4158at 411.634 kb on + strand, within Ac3H11_4158at 411.635 kb on - strand, within Ac3H11_4158at 411.635 kb on - strand, within Ac3H11_4158at 411.635 kb on - strand, within Ac3H11_4158at 411.782 kb on - strandat 411.782 kb on - strandat 411.782 kb on - strandat 411.938 kb on + strand, within Ac3H11_4159at 411.938 kb on + strand, within Ac3H11_4159at 411.938 kb on + strand, within Ac3H11_4159at 411.938 kb on + strand, within Ac3H11_4159at 411.938 kb on + strand, within Ac3H11_4159at 411.938 kb on + strand, within Ac3H11_4159at 411.938 kb on + strand, within Ac3H11_4159at 411.938 kb on + strand, within Ac3H11_4159at 411.939 kb on - strand, within Ac3H11_4159at 411.939 kb on - strand, within Ac3H11_4159at 411.939 kb on - strand, within Ac3H11_4159at 411.939 kb on - strand, within Ac3H11_4159at 411.939 kb on - strand, within Ac3H11_4159at 411.939 kb on - strand, within Ac3H11_4159at 411.939 kb on - strand, within Ac3H11_4159at 411.939 kb on - strand, within Ac3H11_4159at 411.939 kb on - strand, within Ac3H11_4159at 411.939 kb on - strand, within Ac3H11_4159at 411.939 kb on - strand, within Ac3H11_4159at 411.939 kb on - strand, within Ac3H11_4159at 411.939 kb on - strand, within Ac3H11_4159at 411.939 kb on - strand, within Ac3H11_4159at 412.001 kb on + strand, within Ac3H11_4159at 412.001 kb on + strand, within Ac3H11_4159at 412.001 kb on + strand, within Ac3H11_4159at 412.001 kb on + strand, within Ac3H11_4159at 412.002 kb on - strand, within Ac3H11_4159at 412.002 kb on - strand, within Ac3H11_4159at 412.002 kb on - strand, within Ac3H11_4159at 412.002 kb on - strand, within Ac3H11_4159at 412.002 kb on - strand, within Ac3H11_4159at 412.002 kb on - strand, within Ac3H11_4159at 412.002 kb on - strand, within Ac3H11_4159at 412.002 kb on - strand, within Ac3H11_4159at 412.002 kb on - strand, within Ac3H11_4159at 412.002 kb on - strand, within Ac3H11_4159at 412.109 kb on + strand, within Ac3H11_4159at 412.110 kb on - strand, within Ac3H11_4159at 412.110 kb on - strand, within Ac3H11_4159

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
remove
409,850 + Ac3H11_4155 0.62 +0.6
409,850 + Ac3H11_4155 0.62 +0.0
409,850 + Ac3H11_4155 0.62 +0.8
409,850 + Ac3H11_4155 0.62 +0.3
409,850 + Ac3H11_4155 0.62 -3.5
409,850 + Ac3H11_4155 0.62 -0.4
409,851 - Ac3H11_4155 0.62 -0.1
409,851 - Ac3H11_4155 0.62 -0.7
409,851 - Ac3H11_4155 0.62 +0.3
409,851 - Ac3H11_4155 0.62 -1.0
409,991 + Ac3H11_4155 0.77 +0.3
409,991 + Ac3H11_4155 0.77 +0.2
409,991 + Ac3H11_4155 0.77 +0.4
409,991 + Ac3H11_4155 0.77 +0.4
409,991 + Ac3H11_4155 0.77 +0.2
409,991 + Ac3H11_4155 0.77 -1.3
409,991 + Ac3H11_4155 0.77 +0.0
409,992 - Ac3H11_4155 0.77 -0.4
409,992 - Ac3H11_4155 0.77 +0.4
409,992 - Ac3H11_4155 0.77 +0.7
409,992 - Ac3H11_4155 0.77 +0.4
409,992 - Ac3H11_4155 0.77 +0.6
409,992 - Ac3H11_4155 0.77 +1.3
409,992 - Ac3H11_4155 0.77 +0.4
410,425 + Ac3H11_4156 0.56 +0.1
410,425 + Ac3H11_4156 0.56 +0.0
410,426 - Ac3H11_4156 0.56 +0.3
410,470 + Ac3H11_4156 0.67 -0.5
410,470 + Ac3H11_4156 0.67 +0.0
410,470 + Ac3H11_4156 0.67 +1.5
410,470 + Ac3H11_4156 0.67 -0.6
410,470 + Ac3H11_4156 0.67 +0.7
410,470 + Ac3H11_4156 0.67 +0.2
410,470 + Ac3H11_4156 0.67 -0.7
410,471 - Ac3H11_4156 0.67 -1.6
410,471 - Ac3H11_4156 0.67 -0.9
410,471 - Ac3H11_4156 0.67 +0.5
410,658 + -1.7
410,658 + +0.1
410,659 - +0.5
410,659 - +0.1
410,889 + Ac3H11_4157 0.42 -0.1
410,889 + Ac3H11_4157 0.42 +0.4
410,890 - Ac3H11_4157 0.42 -0.1
410,890 - Ac3H11_4157 0.42 -0.0
410,890 - Ac3H11_4157 0.42 +0.1
410,890 - Ac3H11_4157 0.42 +0.1
411,033 + Ac3H11_4157 0.68 +1.5
411,033 + Ac3H11_4157 0.68 +0.4
411,033 + Ac3H11_4157 0.68 +0.7
411,033 + Ac3H11_4157 0.68 +1.8
411,033 + Ac3H11_4157 0.68 +0.6
411,033 + Ac3H11_4157 0.68 +0.2
411,033 + Ac3H11_4157 0.68 +1.1
411,033 + Ac3H11_4157 0.68 +0.2
411,033 + Ac3H11_4157 0.68 -0.9
411,033 + Ac3H11_4157 0.68 +0.1
411,033 + Ac3H11_4157 0.68 +0.9
411,033 + Ac3H11_4157 0.68 -0.7
411,033 + Ac3H11_4157 0.68 -0.7
411,033 + Ac3H11_4157 0.68 +0.5
411,033 + Ac3H11_4157 0.68 -0.3
411,034 - Ac3H11_4157 0.68 +1.1
411,034 - Ac3H11_4157 0.68 +0.1
411,034 - Ac3H11_4157 0.68 +1.0
411,034 - Ac3H11_4157 0.68 -0.1
411,034 - Ac3H11_4157 0.68 +0.1
411,034 - Ac3H11_4157 0.68 +0.6
411,034 - Ac3H11_4157 0.68 +1.3
411,034 - Ac3H11_4157 0.68 +1.0
411,034 - Ac3H11_4157 0.68 +0.3
411,034 - Ac3H11_4157 0.68 -0.3
411,034 - Ac3H11_4157 0.68 +0.3
411,169 + -0.1
411,169 + +1.1
411,169 + +0.7
411,170 - +0.2
411,170 - +0.4
411,189 + -1.0
411,261 + +0.2
411,261 + +1.1
411,472 + Ac3H11_4158 0.34 +0.6
411,473 - Ac3H11_4158 0.34 -0.4
411,634 + Ac3H11_4158 0.73 +1.0
411,634 + Ac3H11_4158 0.73 -0.1
411,634 + Ac3H11_4158 0.73 -0.0
411,635 - Ac3H11_4158 0.73 -0.2
411,635 - Ac3H11_4158 0.73 +1.1
411,635 - Ac3H11_4158 0.73 +0.0
411,782 - +0.3
411,782 - +0.4
411,782 - +0.5
411,938 + Ac3H11_4159 0.20 +0.2
411,938 + Ac3H11_4159 0.20 -0.1
411,938 + Ac3H11_4159 0.20 +1.0
411,938 + Ac3H11_4159 0.20 +0.8
411,938 + Ac3H11_4159 0.20 +0.3
411,938 + Ac3H11_4159 0.20 -0.1
411,938 + Ac3H11_4159 0.20 -0.4
411,938 + Ac3H11_4159 0.20 -0.0
411,939 - Ac3H11_4159 0.20 -0.1
411,939 - Ac3H11_4159 0.20 -1.0
411,939 - Ac3H11_4159 0.20 -0.6
411,939 - Ac3H11_4159 0.20 +0.3
411,939 - Ac3H11_4159 0.20 +0.5
411,939 - Ac3H11_4159 0.20 -0.2
411,939 - Ac3H11_4159 0.20 +0.9
411,939 - Ac3H11_4159 0.20 +1.3
411,939 - Ac3H11_4159 0.20 +0.4
411,939 - Ac3H11_4159 0.20 +1.4
411,939 - Ac3H11_4159 0.20 -0.5
411,939 - Ac3H11_4159 0.20 -0.0
411,939 - Ac3H11_4159 0.20 +0.5
411,939 - Ac3H11_4159 0.20 +0.1
412,001 + Ac3H11_4159 0.29 +0.4
412,001 + Ac3H11_4159 0.29 +0.2
412,001 + Ac3H11_4159 0.29 -0.4
412,001 + Ac3H11_4159 0.29 +0.4
412,002 - Ac3H11_4159 0.29 +0.9
412,002 - Ac3H11_4159 0.29 +1.1
412,002 - Ac3H11_4159 0.29 -0.3
412,002 - Ac3H11_4159 0.29 -0.1
412,002 - Ac3H11_4159 0.29 +0.2
412,002 - Ac3H11_4159 0.29 -0.2
412,002 - Ac3H11_4159 0.29 +0.7
412,002 - Ac3H11_4159 0.29 +0.2
412,002 - Ac3H11_4159 0.29 +0.6
412,002 - Ac3H11_4159 0.29 +1.5
412,109 + Ac3H11_4159 0.45 +0.2
412,110 - Ac3H11_4159 0.45 +1.2
412,110 - Ac3H11_4159 0.45 -1.3

Or see this region's nucleotide sequence