Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4121

Experiment: casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_4120 and Ac3H11_4121 are separated by 45 nucleotidesAc3H11_4121 and Ac3H11_4122 are separated by 191 nucleotides Ac3H11_4120 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 373,198 to 375,720 _4120 Ac3H11_4121 - Fe-S OXIDOREDUCTASE (1.8.-.-), at 375,766 to 378,267 _4121 Ac3H11_4122 - Histone acetyltransferase HPA2 and related acetyltransferases, at 378,459 to 379,427 _4122 Position (kb) 375 376 377 378 379Strain fitness (log2 ratio) -2 -1 0 1 2 3at 374.821 kb on + strand, within Ac3H11_4120at 374.821 kb on + strand, within Ac3H11_4120at 374.822 kb on - strand, within Ac3H11_4120at 374.822 kb on - strand, within Ac3H11_4120at 374.822 kb on - strand, within Ac3H11_4120at 374.822 kb on - strand, within Ac3H11_4120at 375.046 kb on + strand, within Ac3H11_4120at 375.046 kb on + strand, within Ac3H11_4120at 375.373 kb on + strand, within Ac3H11_4120at 375.373 kb on + strand, within Ac3H11_4120at 375.373 kb on + strand, within Ac3H11_4120at 375.373 kb on + strand, within Ac3H11_4120at 375.374 kb on - strand, within Ac3H11_4120at 375.397 kb on + strand, within Ac3H11_4120at 375.397 kb on + strand, within Ac3H11_4120at 375.397 kb on + strand, within Ac3H11_4120at 375.397 kb on + strand, within Ac3H11_4120at 375.398 kb on - strand, within Ac3H11_4120at 375.565 kb on + strandat 375.565 kb on + strandat 375.565 kb on + strandat 375.565 kb on + strandat 375.566 kb on - strandat 375.566 kb on - strandat 375.577 kb on + strandat 375.577 kb on + strandat 375.610 kb on + strandat 375.610 kb on + strandat 375.610 kb on + strandat 375.610 kb on + strandat 375.611 kb on - strandat 375.611 kb on - strandat 375.611 kb on - strandat 375.975 kb on - strandat 375.975 kb on - strandat 375.975 kb on - strandat 376.031 kb on + strand, within Ac3H11_4121at 376.155 kb on - strand, within Ac3H11_4121at 376.274 kb on + strand, within Ac3H11_4121at 376.274 kb on + strand, within Ac3H11_4121at 376.274 kb on + strand, within Ac3H11_4121at 376.274 kb on + strand, within Ac3H11_4121at 376.274 kb on + strand, within Ac3H11_4121at 376.275 kb on - strand, within Ac3H11_4121at 376.275 kb on - strand, within Ac3H11_4121at 376.275 kb on - strand, within Ac3H11_4121at 376.275 kb on - strand, within Ac3H11_4121at 376.275 kb on - strand, within Ac3H11_4121at 376.275 kb on - strand, within Ac3H11_4121at 376.307 kb on + strand, within Ac3H11_4121at 376.307 kb on + strand, within Ac3H11_4121at 376.307 kb on + strand, within Ac3H11_4121at 376.308 kb on - strand, within Ac3H11_4121at 376.308 kb on - strand, within Ac3H11_4121at 376.409 kb on + strand, within Ac3H11_4121at 376.410 kb on - strand, within Ac3H11_4121at 376.410 kb on - strand, within Ac3H11_4121at 376.410 kb on - strand, within Ac3H11_4121at 376.410 kb on - strand, within Ac3H11_4121at 376.478 kb on + strand, within Ac3H11_4121at 376.478 kb on + strand, within Ac3H11_4121at 376.478 kb on + strand, within Ac3H11_4121at 376.479 kb on - strand, within Ac3H11_4121at 376.479 kb on - strand, within Ac3H11_4121at 376.479 kb on - strand, within Ac3H11_4121at 376.479 kb on - strand, within Ac3H11_4121at 376.586 kb on + strand, within Ac3H11_4121at 376.586 kb on + strand, within Ac3H11_4121at 376.586 kb on + strand, within Ac3H11_4121at 376.587 kb on - strand, within Ac3H11_4121at 376.613 kb on + strand, within Ac3H11_4121at 376.614 kb on - strand, within Ac3H11_4121at 376.673 kb on + strand, within Ac3H11_4121at 376.673 kb on + strand, within Ac3H11_4121at 376.737 kb on + strand, within Ac3H11_4121at 376.737 kb on + strand, within Ac3H11_4121at 376.738 kb on - strand, within Ac3H11_4121at 376.738 kb on - strand, within Ac3H11_4121at 376.738 kb on - strand, within Ac3H11_4121at 376.738 kb on - strand, within Ac3H11_4121at 376.787 kb on + strand, within Ac3H11_4121at 376.787 kb on + strand, within Ac3H11_4121at 376.787 kb on + strand, within Ac3H11_4121at 376.787 kb on + strand, within Ac3H11_4121at 376.787 kb on + strand, within Ac3H11_4121at 376.787 kb on + strand, within Ac3H11_4121at 376.788 kb on - strand, within Ac3H11_4121at 376.788 kb on - strand, within Ac3H11_4121at 376.788 kb on - strand, within Ac3H11_4121at 376.788 kb on - strand, within Ac3H11_4121at 376.788 kb on - strand, within Ac3H11_4121at 377.036 kb on + strand, within Ac3H11_4121at 377.036 kb on + strand, within Ac3H11_4121at 377.037 kb on - strand, within Ac3H11_4121at 377.037 kb on - strand, within Ac3H11_4121at 377.060 kb on + strand, within Ac3H11_4121at 377.060 kb on + strand, within Ac3H11_4121at 377.078 kb on + strand, within Ac3H11_4121at 377.078 kb on + strand, within Ac3H11_4121at 377.078 kb on + strand, within Ac3H11_4121at 377.079 kb on - strand, within Ac3H11_4121at 377.079 kb on - strand, within Ac3H11_4121at 377.079 kb on - strand, within Ac3H11_4121at 377.079 kb on - strand, within Ac3H11_4121at 377.079 kb on - strand, within Ac3H11_4121at 377.079 kb on - strand, within Ac3H11_4121at 377.079 kb on - strand, within Ac3H11_4121at 377.079 kb on - strand, within Ac3H11_4121at 377.079 kb on - strand, within Ac3H11_4121at 377.222 kb on + strand, within Ac3H11_4121at 377.222 kb on + strand, within Ac3H11_4121at 377.252 kb on + strand, within Ac3H11_4121at 377.252 kb on + strand, within Ac3H11_4121at 377.252 kb on + strand, within Ac3H11_4121at 377.252 kb on + strand, within Ac3H11_4121at 377.253 kb on - strand, within Ac3H11_4121at 377.253 kb on - strand, within Ac3H11_4121at 377.409 kb on + strand, within Ac3H11_4121at 377.413 kb on + strand, within Ac3H11_4121at 377.483 kb on + strand, within Ac3H11_4121at 377.483 kb on + strand, within Ac3H11_4121at 377.483 kb on + strand, within Ac3H11_4121at 377.484 kb on - strand, within Ac3H11_4121at 377.484 kb on - strand, within Ac3H11_4121at 377.484 kb on - strand, within Ac3H11_4121at 377.484 kb on - strand, within Ac3H11_4121at 377.484 kb on - strand, within Ac3H11_4121at 377.484 kb on - strand, within Ac3H11_4121at 377.675 kb on + strand, within Ac3H11_4121at 377.675 kb on + strand, within Ac3H11_4121at 377.676 kb on - strand, within Ac3H11_4121at 377.735 kb on + strand, within Ac3H11_4121at 377.741 kb on + strand, within Ac3H11_4121at 377.741 kb on + strand, within Ac3H11_4121at 377.741 kb on + strand, within Ac3H11_4121at 377.742 kb on - strand, within Ac3H11_4121at 377.742 kb on - strand, within Ac3H11_4121at 377.742 kb on - strand, within Ac3H11_4121at 377.742 kb on - strand, within Ac3H11_4121at 377.742 kb on - strand, within Ac3H11_4121at 377.801 kb on + strand, within Ac3H11_4121at 377.801 kb on + strand, within Ac3H11_4121at 377.802 kb on - strand, within Ac3H11_4121at 377.802 kb on - strand, within Ac3H11_4121at 377.802 kb on - strand, within Ac3H11_4121at 377.802 kb on - strand, within Ac3H11_4121at 377.825 kb on + strand, within Ac3H11_4121at 377.826 kb on - strand, within Ac3H11_4121at 377.876 kb on + strand, within Ac3H11_4121at 377.876 kb on + strand, within Ac3H11_4121at 377.876 kb on + strand, within Ac3H11_4121at 377.877 kb on - strand, within Ac3H11_4121at 377.877 kb on - strand, within Ac3H11_4121at 377.877 kb on - strand, within Ac3H11_4121at 377.877 kb on - strand, within Ac3H11_4121at 377.877 kb on - strand, within Ac3H11_4121at 377.877 kb on - strand, within Ac3H11_4121at 377.912 kb on + strand, within Ac3H11_4121at 378.092 kb on + strandat 378.092 kb on + strandat 378.092 kb on + strandat 378.092 kb on + strandat 378.092 kb on + strandat 378.092 kb on + strandat 378.092 kb on + strandat 378.092 kb on + strandat 378.092 kb on + strandat 378.092 kb on + strandat 378.092 kb on + strandat 378.092 kb on + strandat 378.092 kb on + strandat 378.093 kb on - strandat 378.093 kb on - strandat 378.093 kb on - strandat 378.093 kb on - strandat 378.093 kb on - strandat 378.093 kb on - strandat 378.093 kb on - strandat 378.093 kb on - strandat 378.093 kb on - strandat 378.093 kb on - strandat 378.093 kb on - strandat 378.093 kb on - strandat 378.200 kb on + strandat 378.200 kb on + strandat 378.209 kb on + strandat 378.210 kb on - strandat 378.331 kb on + strandat 378.331 kb on + strandat 378.332 kb on - strandat 378.344 kb on + strandat 378.345 kb on - strandat 378.345 kb on - strandat 378.418 kb on + strandat 378.419 kb on - strandat 378.420 kb on + strandat 378.437 kb on + strandat 378.437 kb on + strandat 378.437 kb on + strandat 378.442 kb on - strandat 378.458 kb on + strandat 378.458 kb on + strandat 378.459 kb on - strandat 378.459 kb on - strandat 378.579 kb on + strand, within Ac3H11_4122at 378.579 kb on + strand, within Ac3H11_4122at 378.580 kb on - strand, within Ac3H11_4122at 378.690 kb on + strand, within Ac3H11_4122at 378.691 kb on - strand, within Ac3H11_4122at 378.691 kb on - strand, within Ac3H11_4122at 379.029 kb on + strand, within Ac3H11_4122at 379.029 kb on + strand, within Ac3H11_4122

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
remove
374,821 + Ac3H11_4120 0.64 +1.3
374,821 + Ac3H11_4120 0.64 -0.2
374,822 - Ac3H11_4120 0.64 +0.3
374,822 - Ac3H11_4120 0.64 +1.1
374,822 - Ac3H11_4120 0.64 +0.6
374,822 - Ac3H11_4120 0.64 -0.8
375,046 + Ac3H11_4120 0.73 +0.9
375,046 + Ac3H11_4120 0.73 -0.2
375,373 + Ac3H11_4120 0.86 -0.0
375,373 + Ac3H11_4120 0.86 +0.6
375,373 + Ac3H11_4120 0.86 +1.2
375,373 + Ac3H11_4120 0.86 -0.2
375,374 - Ac3H11_4120 0.86 -0.2
375,397 + Ac3H11_4120 0.87 +1.6
375,397 + Ac3H11_4120 0.87 -0.7
375,397 + Ac3H11_4120 0.87 +0.4
375,397 + Ac3H11_4120 0.87 +0.0
375,398 - Ac3H11_4120 0.87 -0.1
375,565 + -1.5
375,565 + +0.1
375,565 + -1.7
375,565 + -0.0
375,566 - +1.6
375,566 - -0.4
375,577 + +0.0
375,577 + -1.1
375,610 + -0.2
375,610 + +0.3
375,610 + +0.7
375,610 + -0.4
375,611 - -1.2
375,611 - +0.1
375,611 - +0.2
375,975 - -0.3
375,975 - +0.9
375,975 - -0.0
376,031 + Ac3H11_4121 0.11 +0.6
376,155 - Ac3H11_4121 0.16 +0.8
376,274 + Ac3H11_4121 0.20 -0.1
376,274 + Ac3H11_4121 0.20 -0.2
376,274 + Ac3H11_4121 0.20 +0.7
376,274 + Ac3H11_4121 0.20 +0.4
376,274 + Ac3H11_4121 0.20 +0.9
376,275 - Ac3H11_4121 0.20 +1.2
376,275 - Ac3H11_4121 0.20 -0.1
376,275 - Ac3H11_4121 0.20 +0.7
376,275 - Ac3H11_4121 0.20 +0.2
376,275 - Ac3H11_4121 0.20 -1.0
376,275 - Ac3H11_4121 0.20 +0.0
376,307 + Ac3H11_4121 0.22 +0.0
376,307 + Ac3H11_4121 0.22 +0.5
376,307 + Ac3H11_4121 0.22 -0.4
376,308 - Ac3H11_4121 0.22 +0.2
376,308 - Ac3H11_4121 0.22 +0.5
376,409 + Ac3H11_4121 0.26 -0.4
376,410 - Ac3H11_4121 0.26 -0.6
376,410 - Ac3H11_4121 0.26 -0.2
376,410 - Ac3H11_4121 0.26 +0.3
376,410 - Ac3H11_4121 0.26 +0.3
376,478 + Ac3H11_4121 0.28 +0.0
376,478 + Ac3H11_4121 0.28 +0.6
376,478 + Ac3H11_4121 0.28 +0.9
376,479 - Ac3H11_4121 0.28 -0.6
376,479 - Ac3H11_4121 0.28 +0.5
376,479 - Ac3H11_4121 0.28 +0.6
376,479 - Ac3H11_4121 0.28 -0.1
376,586 + Ac3H11_4121 0.33 -0.1
376,586 + Ac3H11_4121 0.33 -0.3
376,586 + Ac3H11_4121 0.33 +0.2
376,587 - Ac3H11_4121 0.33 +0.1
376,613 + Ac3H11_4121 0.34 -2.0
376,614 - Ac3H11_4121 0.34 -0.0
376,673 + Ac3H11_4121 0.36 +0.7
376,673 + Ac3H11_4121 0.36 +0.7
376,737 + Ac3H11_4121 0.39 +1.4
376,737 + Ac3H11_4121 0.39 -0.2
376,738 - Ac3H11_4121 0.39 +0.4
376,738 - Ac3H11_4121 0.39 +0.9
376,738 - Ac3H11_4121 0.39 +0.4
376,738 - Ac3H11_4121 0.39 -0.3
376,787 + Ac3H11_4121 0.41 -2.5
376,787 + Ac3H11_4121 0.41 -0.1
376,787 + Ac3H11_4121 0.41 +1.2
376,787 + Ac3H11_4121 0.41 +0.4
376,787 + Ac3H11_4121 0.41 -0.0
376,787 + Ac3H11_4121 0.41 +3.1
376,788 - Ac3H11_4121 0.41 +0.4
376,788 - Ac3H11_4121 0.41 +0.5
376,788 - Ac3H11_4121 0.41 +0.4
376,788 - Ac3H11_4121 0.41 +0.3
376,788 - Ac3H11_4121 0.41 -1.1
377,036 + Ac3H11_4121 0.51 +0.1
377,036 + Ac3H11_4121 0.51 -0.0
377,037 - Ac3H11_4121 0.51 +0.3
377,037 - Ac3H11_4121 0.51 +1.6
377,060 + Ac3H11_4121 0.52 -1.7
377,060 + Ac3H11_4121 0.52 +0.1
377,078 + Ac3H11_4121 0.52 +0.6
377,078 + Ac3H11_4121 0.52 +0.4
377,078 + Ac3H11_4121 0.52 +0.3
377,079 - Ac3H11_4121 0.52 +0.9
377,079 - Ac3H11_4121 0.52 +0.9
377,079 - Ac3H11_4121 0.52 +0.2
377,079 - Ac3H11_4121 0.52 +0.8
377,079 - Ac3H11_4121 0.52 +0.4
377,079 - Ac3H11_4121 0.52 +1.7
377,079 - Ac3H11_4121 0.52 +0.5
377,079 - Ac3H11_4121 0.52 +0.5
377,079 - Ac3H11_4121 0.52 -0.4
377,222 + Ac3H11_4121 0.58 +0.1
377,222 + Ac3H11_4121 0.58 +0.3
377,252 + Ac3H11_4121 0.59 -0.1
377,252 + Ac3H11_4121 0.59 -0.9
377,252 + Ac3H11_4121 0.59 +0.7
377,252 + Ac3H11_4121 0.59 +0.9
377,253 - Ac3H11_4121 0.59 -0.6
377,253 - Ac3H11_4121 0.59 +1.0
377,409 + Ac3H11_4121 0.66 +0.7
377,413 + Ac3H11_4121 0.66 +0.9
377,483 + Ac3H11_4121 0.69 +1.1
377,483 + Ac3H11_4121 0.69 +0.8
377,483 + Ac3H11_4121 0.69 -0.0
377,484 - Ac3H11_4121 0.69 -0.5
377,484 - Ac3H11_4121 0.69 +0.3
377,484 - Ac3H11_4121 0.69 -0.1
377,484 - Ac3H11_4121 0.69 +0.3
377,484 - Ac3H11_4121 0.69 -0.5
377,484 - Ac3H11_4121 0.69 +0.4
377,675 + Ac3H11_4121 0.76 -2.3
377,675 + Ac3H11_4121 0.76 +0.0
377,676 - Ac3H11_4121 0.76 +0.4
377,735 + Ac3H11_4121 0.79 +0.2
377,741 + Ac3H11_4121 0.79 -0.0
377,741 + Ac3H11_4121 0.79 +1.4
377,741 + Ac3H11_4121 0.79 +0.3
377,742 - Ac3H11_4121 0.79 -1.0
377,742 - Ac3H11_4121 0.79 +0.4
377,742 - Ac3H11_4121 0.79 +0.4
377,742 - Ac3H11_4121 0.79 +0.3
377,742 - Ac3H11_4121 0.79 +1.1
377,801 + Ac3H11_4121 0.81 +0.9
377,801 + Ac3H11_4121 0.81 -2.0
377,802 - Ac3H11_4121 0.81 +0.7
377,802 - Ac3H11_4121 0.81 -0.1
377,802 - Ac3H11_4121 0.81 -0.4
377,802 - Ac3H11_4121 0.81 -0.9
377,825 + Ac3H11_4121 0.82 +0.0
377,826 - Ac3H11_4121 0.82 -0.2
377,876 + Ac3H11_4121 0.84 -0.1
377,876 + Ac3H11_4121 0.84 +1.8
377,876 + Ac3H11_4121 0.84 +0.7
377,877 - Ac3H11_4121 0.84 +0.6
377,877 - Ac3H11_4121 0.84 -0.1
377,877 - Ac3H11_4121 0.84 +0.7
377,877 - Ac3H11_4121 0.84 +0.8
377,877 - Ac3H11_4121 0.84 +0.5
377,877 - Ac3H11_4121 0.84 -0.1
377,912 + Ac3H11_4121 0.86 +0.2
378,092 + +0.6
378,092 + -0.3
378,092 + -0.2
378,092 + +0.6
378,092 + -0.2
378,092 + +0.7
378,092 + -2.6
378,092 + +0.8
378,092 + +0.5
378,092 + +0.1
378,092 + -0.4
378,092 + +0.3
378,092 + -0.2
378,093 - +0.0
378,093 - +1.2
378,093 - +0.0
378,093 - +0.2
378,093 - +0.7
378,093 - -1.0
378,093 - -0.4
378,093 - +0.5
378,093 - +0.3
378,093 - -0.7
378,093 - +0.7
378,093 - +1.0
378,200 + -1.7
378,200 + +0.3
378,209 + +0.7
378,210 - -0.2
378,331 + -0.2
378,331 + +0.6
378,332 - +0.2
378,344 + +0.8
378,345 - +1.1
378,345 - +0.0
378,418 + -1.7
378,419 - -0.3
378,420 + +1.1
378,437 + -0.3
378,437 + -0.2
378,437 + -1.6
378,442 - +0.6
378,458 + -0.1
378,458 + -0.7
378,459 - -0.5
378,459 - +0.6
378,579 + Ac3H11_4122 0.12 -1.3
378,579 + Ac3H11_4122 0.12 +0.1
378,580 - Ac3H11_4122 0.12 -0.2
378,690 + Ac3H11_4122 0.24 -0.5
378,691 - Ac3H11_4122 0.24 +1.7
378,691 - Ac3H11_4122 0.24 -0.6
379,029 + Ac3H11_4122 0.59 -0.7
379,029 + Ac3H11_4122 0.59 -0.7

Or see this region's nucleotide sequence