Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2307 and Ac3H11_2308 are separated by 126 nucleotides Ac3H11_2308 and Ac3H11_2309 are separated by 134 nucleotides Ac3H11_2309 and Ac3H11_2310 are separated by 743 nucleotides
Ac3H11_2307 - Transcriptional regulator, MarR family, at 549,850 to 550,347
_2307
Ac3H11_2308 - Fumarylacetoacetate hydrolase family protein, at 550,474 to 551,169
_2308
Ac3H11_2309 - FAD pyrophosphatase (EC 3.6.1.18), at 551,304 to 551,855
_2309
Ac3H11_2310 - Pole remodelling regulatory diguanylate cyclase, at 552,599 to 553,726
_2310
Position (kb) 551
552 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 550.317 kb on + strand at 550.318 kb on - strand at 550.318 kb on - strand at 550.318 kb on - strand at 550.318 kb on - strand at 550.480 kb on + strand at 550.480 kb on + strand at 550.480 kb on + strand at 550.480 kb on + strand at 550.480 kb on + strand at 550.480 kb on + strand at 550.480 kb on + strand at 550.480 kb on + strand at 550.480 kb on + strand at 550.480 kb on + strand at 550.480 kb on + strand at 550.480 kb on + strand at 550.480 kb on + strand at 550.480 kb on + strand at 550.481 kb on - strand at 550.481 kb on - strand at 550.481 kb on - strand at 550.481 kb on - strand at 550.481 kb on - strand at 550.481 kb on - strand at 550.481 kb on - strand at 550.481 kb on - strand at 550.481 kb on - strand at 550.489 kb on - strand at 550.555 kb on + strand, within Ac3H11_2308 at 550.555 kb on + strand, within Ac3H11_2308 at 550.556 kb on - strand, within Ac3H11_2308 at 550.556 kb on - strand, within Ac3H11_2308 at 550.556 kb on - strand, within Ac3H11_2308 at 550.556 kb on - strand, within Ac3H11_2308 at 550.556 kb on - strand, within Ac3H11_2308 at 550.556 kb on - strand, within Ac3H11_2308 at 550.556 kb on - strand, within Ac3H11_2308 at 550.556 kb on - strand, within Ac3H11_2308 at 550.573 kb on + strand, within Ac3H11_2308 at 550.573 kb on + strand, within Ac3H11_2308 at 550.573 kb on + strand, within Ac3H11_2308 at 550.574 kb on - strand, within Ac3H11_2308 at 550.574 kb on - strand, within Ac3H11_2308 at 550.574 kb on - strand, within Ac3H11_2308 at 550.574 kb on - strand, within Ac3H11_2308 at 550.626 kb on - strand, within Ac3H11_2308 at 550.627 kb on + strand, within Ac3H11_2308 at 550.687 kb on + strand, within Ac3H11_2308 at 550.687 kb on + strand, within Ac3H11_2308 at 550.789 kb on + strand, within Ac3H11_2308 at 550.789 kb on + strand, within Ac3H11_2308 at 550.789 kb on + strand, within Ac3H11_2308 at 550.789 kb on + strand, within Ac3H11_2308 at 550.789 kb on + strand, within Ac3H11_2308 at 550.789 kb on + strand, within Ac3H11_2308 at 550.789 kb on + strand, within Ac3H11_2308 at 550.789 kb on + strand, within Ac3H11_2308 at 550.789 kb on + strand, within Ac3H11_2308 at 550.789 kb on + strand, within Ac3H11_2308 at 550.789 kb on + strand, within Ac3H11_2308 at 550.789 kb on + strand, within Ac3H11_2308 at 550.789 kb on + strand, within Ac3H11_2308 at 550.790 kb on - strand, within Ac3H11_2308 at 550.790 kb on - strand, within Ac3H11_2308 at 550.790 kb on - strand, within Ac3H11_2308 at 550.790 kb on - strand, within Ac3H11_2308 at 550.790 kb on - strand, within Ac3H11_2308 at 550.790 kb on - strand, within Ac3H11_2308 at 551.071 kb on + strand, within Ac3H11_2308 at 551.071 kb on + strand, within Ac3H11_2308 at 551.071 kb on + strand, within Ac3H11_2308 at 551.071 kb on + strand, within Ac3H11_2308 at 551.072 kb on - strand, within Ac3H11_2308 at 551.072 kb on - strand, within Ac3H11_2308 at 551.168 kb on - strand at 551.168 kb on - strand at 551.168 kb on - strand at 551.252 kb on + strand at 551.253 kb on - strand at 551.253 kb on - strand at 551.517 kb on - strand, within Ac3H11_2309 at 551.517 kb on - strand, within Ac3H11_2309 at 551.671 kb on - strand, within Ac3H11_2309 at 551.671 kb on - strand, within Ac3H11_2309 at 551.671 kb on - strand, within Ac3H11_2309 at 551.709 kb on + strand, within Ac3H11_2309 at 551.735 kb on + strand, within Ac3H11_2309 at 551.736 kb on - strand, within Ac3H11_2309 at 551.780 kb on - strand, within Ac3H11_2309 at 551.799 kb on + strand, within Ac3H11_2309 at 551.800 kb on - strand at 551.800 kb on - strand at 551.800 kb on - strand at 551.853 kb on + strand at 551.854 kb on - strand at 551.854 kb on - strand at 551.912 kb on + strand at 551.912 kb on + strand at 551.913 kb on - strand at 551.913 kb on - strand at 551.928 kb on - strand at 551.928 kb on - strand at 551.940 kb on + strand at 551.940 kb on + strand at 551.941 kb on - strand at 551.941 kb on - strand at 551.941 kb on - strand at 551.941 kb on - strand at 551.941 kb on - strand at 551.941 kb on - strand at 551.941 kb on - strand at 551.946 kb on + strand at 551.946 kb on + strand at 551.946 kb on + strand at 551.946 kb on + strand at 551.946 kb on + strand at 551.946 kb on + strand at 551.947 kb on - strand at 551.947 kb on - strand at 551.947 kb on - strand at 551.947 kb on - strand at 551.947 kb on - strand at 551.947 kb on - strand at 551.947 kb on - strand at 551.970 kb on + strand at 551.970 kb on + strand at 551.970 kb on + strand at 551.970 kb on + strand at 551.971 kb on - strand at 551.971 kb on - strand at 551.971 kb on - strand at 551.971 kb on - strand at 551.971 kb on - strand at 551.971 kb on - strand at 551.971 kb on - strand at 551.983 kb on + strand at 551.984 kb on - strand at 551.984 kb on - strand at 552.009 kb on + strand at 552.010 kb on - strand at 552.010 kb on - strand at 552.010 kb on - strand at 552.010 kb on - strand at 552.033 kb on + strand at 552.034 kb on - strand at 552.034 kb on - strand at 552.067 kb on - strand at 552.133 kb on - strand at 552.202 kb on + strand at 552.202 kb on + strand at 552.202 kb on + strand at 552.202 kb on + strand at 552.202 kb on + strand at 552.202 kb on + strand at 552.203 kb on - strand at 552.218 kb on - strand at 552.218 kb on - strand at 552.364 kb on + strand at 552.364 kb on + strand at 552.364 kb on + strand at 552.364 kb on + strand at 552.364 kb on + strand at 552.364 kb on + strand at 552.364 kb on + strand at 552.365 kb on - strand at 552.365 kb on - strand at 552.365 kb on - strand at 552.365 kb on - strand at 552.365 kb on - strand at 552.365 kb on - strand at 552.365 kb on - strand at 552.365 kb on - strand at 552.365 kb on - strand at 552.365 kb on - strand at 552.399 kb on + strand at 552.399 kb on + strand at 552.403 kb on + strand at 552.403 kb on + strand at 552.403 kb on + strand at 552.403 kb on + strand at 552.403 kb on + strand at 552.404 kb on - strand at 552.405 kb on + strand at 552.405 kb on + strand at 552.405 kb on + strand at 552.405 kb on + strand at 552.405 kb on + strand at 552.406 kb on - strand at 552.406 kb on - strand at 552.406 kb on - strand at 552.409 kb on + strand at 552.409 kb on + strand at 552.409 kb on + strand at 552.409 kb on + strand at 552.409 kb on + strand at 552.410 kb on - strand at 552.410 kb on - strand at 552.410 kb on - strand at 552.410 kb on - strand at 552.410 kb on - strand at 552.410 kb on - strand at 552.410 kb on - strand at 552.425 kb on - strand at 552.425 kb on - strand at 552.456 kb on + strand at 552.456 kb on + strand at 552.456 kb on + strand at 552.456 kb on + strand at 552.456 kb on + strand at 552.456 kb on + strand at 552.456 kb on + strand at 552.456 kb on + strand at 552.456 kb on + strand at 552.457 kb on - strand at 552.457 kb on - strand at 552.457 kb on - strand at 552.457 kb on - strand at 552.457 kb on - strand at 552.457 kb on - strand at 552.457 kb on - strand at 552.457 kb on - strand at 552.457 kb on - strand at 552.457 kb on - strand at 552.457 kb on - strand at 552.457 kb on - strand at 552.457 kb on - strand at 552.465 kb on + strand at 552.466 kb on - strand at 552.466 kb on - strand at 552.466 kb on - strand at 552.520 kb on + strand at 552.520 kb on + strand at 552.520 kb on + strand at 552.520 kb on + strand at 552.520 kb on + strand at 552.520 kb on + strand at 552.521 kb on - strand at 552.521 kb on - strand at 552.521 kb on - strand at 552.521 kb on - strand at 552.566 kb on + strand at 552.566 kb on + strand at 552.567 kb on - strand at 552.567 kb on - strand at 552.737 kb on + strand, within Ac3H11_2310 at 552.738 kb on - strand, within Ac3H11_2310 at 552.738 kb on - strand, within Ac3H11_2310 at 552.769 kb on - strand, within Ac3H11_2310 at 552.795 kb on + strand, within Ac3H11_2310 at 552.795 kb on + strand, within Ac3H11_2310 at 552.795 kb on + strand, within Ac3H11_2310 at 552.796 kb on - strand, within Ac3H11_2310 at 552.796 kb on - strand, within Ac3H11_2310 at 552.796 kb on - strand, within Ac3H11_2310 at 552.796 kb on - strand, within Ac3H11_2310
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 550,317 + -0.8 550,318 - +0.8 550,318 - +0.6 550,318 - +0.3 550,318 - +0.3 550,480 + +1.0 550,480 + +0.1 550,480 + -0.3 550,480 + +0.9 550,480 + -0.3 550,480 + -0.9 550,480 + -0.4 550,480 + +0.3 550,480 + -0.8 550,480 + -1.2 550,480 + -0.3 550,480 + +0.0 550,480 + +0.5 550,480 + -0.0 550,481 - +0.2 550,481 - +0.1 550,481 - +0.4 550,481 - -0.2 550,481 - -0.0 550,481 - -0.8 550,481 - -1.2 550,481 - -0.0 550,481 - +1.2 550,489 - -0.2 550,555 + Ac3H11_2308 0.12 -0.7 550,555 + Ac3H11_2308 0.12 +0.8 550,556 - Ac3H11_2308 0.12 -0.3 550,556 - Ac3H11_2308 0.12 +0.4 550,556 - Ac3H11_2308 0.12 -1.0 550,556 - Ac3H11_2308 0.12 -0.1 550,556 - Ac3H11_2308 0.12 +0.3 550,556 - Ac3H11_2308 0.12 +0.8 550,556 - Ac3H11_2308 0.12 +0.0 550,556 - Ac3H11_2308 0.12 -0.2 550,573 + Ac3H11_2308 0.14 +0.8 550,573 + Ac3H11_2308 0.14 -0.6 550,573 + Ac3H11_2308 0.14 +0.7 550,574 - Ac3H11_2308 0.14 +0.6 550,574 - Ac3H11_2308 0.14 -0.4 550,574 - Ac3H11_2308 0.14 +0.1 550,574 - Ac3H11_2308 0.14 -0.5 550,626 - Ac3H11_2308 0.22 -0.8 550,627 + Ac3H11_2308 0.22 -0.4 550,687 + Ac3H11_2308 0.31 -1.3 550,687 + Ac3H11_2308 0.31 +0.0 550,789 + Ac3H11_2308 0.45 -1.0 550,789 + Ac3H11_2308 0.45 +1.3 550,789 + Ac3H11_2308 0.45 +0.6 550,789 + Ac3H11_2308 0.45 -2.2 550,789 + Ac3H11_2308 0.45 -0.7 550,789 + Ac3H11_2308 0.45 -0.6 550,789 + Ac3H11_2308 0.45 -0.6 550,789 + Ac3H11_2308 0.45 -0.7 550,789 + Ac3H11_2308 0.45 -1.3 550,789 + Ac3H11_2308 0.45 +0.6 550,789 + Ac3H11_2308 0.45 +0.1 550,789 + Ac3H11_2308 0.45 -1.2 550,789 + Ac3H11_2308 0.45 -0.5 550,790 - Ac3H11_2308 0.45 -1.0 550,790 - Ac3H11_2308 0.45 -1.0 550,790 - Ac3H11_2308 0.45 +0.2 550,790 - Ac3H11_2308 0.45 -0.7 550,790 - Ac3H11_2308 0.45 -0.6 550,790 - Ac3H11_2308 0.45 +0.1 551,071 + Ac3H11_2308 0.86 +1.0 551,071 + Ac3H11_2308 0.86 +0.1 551,071 + Ac3H11_2308 0.86 -1.9 551,071 + Ac3H11_2308 0.86 +0.4 551,072 - Ac3H11_2308 0.86 +0.3 551,072 - Ac3H11_2308 0.86 +0.7 551,168 - +0.5 551,168 - -0.3 551,168 - +0.4 551,252 + -0.4 551,253 - +0.2 551,253 - -0.9 551,517 - Ac3H11_2309 0.39 -0.7 551,517 - Ac3H11_2309 0.39 -0.1 551,671 - Ac3H11_2309 0.66 -0.1 551,671 - Ac3H11_2309 0.66 +0.4 551,671 - Ac3H11_2309 0.66 -0.7 551,709 + Ac3H11_2309 0.73 +0.1 551,735 + Ac3H11_2309 0.78 +1.2 551,736 - Ac3H11_2309 0.78 +0.6 551,780 - Ac3H11_2309 0.86 +0.2 551,799 + Ac3H11_2309 0.90 +0.6 551,800 - +0.3 551,800 - +0.4 551,800 - -0.3 551,853 + -0.3 551,854 - +0.1 551,854 - +0.6 551,912 + -0.0 551,912 + +0.5 551,913 - +0.3 551,913 - +0.3 551,928 - +0.3 551,928 - -0.2 551,940 + -0.8 551,940 + +0.8 551,941 - +0.2 551,941 - +0.1 551,941 - +0.6 551,941 - +0.0 551,941 - -0.4 551,941 - -0.4 551,941 - -0.1 551,946 + +0.4 551,946 + -0.8 551,946 + -0.1 551,946 + +0.0 551,946 + -1.6 551,946 + +0.1 551,947 - +0.1 551,947 - +0.1 551,947 - -0.2 551,947 - -0.7 551,947 - +0.5 551,947 - +1.8 551,947 - +0.7 551,970 + +0.2 551,970 + -0.2 551,970 + -0.8 551,970 + +0.4 551,971 - +0.6 551,971 - +1.0 551,971 - +0.3 551,971 - -0.4 551,971 - -0.6 551,971 - -0.4 551,971 - -0.2 551,983 + +0.3 551,984 - -0.6 551,984 - -0.3 552,009 + +0.8 552,010 - +0.4 552,010 - +0.2 552,010 - -0.7 552,010 - +1.0 552,033 + +0.7 552,034 - +0.2 552,034 - +0.7 552,067 - -1.2 552,133 - -0.3 552,202 + -0.7 552,202 + +0.2 552,202 + +0.0 552,202 + -0.8 552,202 + +0.1 552,202 + +0.2 552,203 - +0.1 552,218 - +0.6 552,218 - -0.6 552,364 + +0.6 552,364 + +0.9 552,364 + +3.6 552,364 + +0.4 552,364 + +0.1 552,364 + +0.3 552,364 + -0.1 552,365 - -0.4 552,365 - +1.8 552,365 - +0.4 552,365 - -0.0 552,365 - -0.8 552,365 - -0.5 552,365 - +1.8 552,365 - +0.4 552,365 - +0.2 552,365 - -0.0 552,399 + -0.4 552,399 + -0.1 552,403 + +0.6 552,403 + -0.3 552,403 + -0.2 552,403 + +0.3 552,403 + -0.1 552,404 - +0.0 552,405 + +0.5 552,405 + -0.1 552,405 + -0.1 552,405 + -0.5 552,405 + +0.7 552,406 - +1.4 552,406 - +0.8 552,406 - +0.4 552,409 + +0.3 552,409 + -0.4 552,409 + -0.4 552,409 + +0.8 552,409 + -0.1 552,410 - +1.4 552,410 - +0.4 552,410 - +0.7 552,410 - -2.2 552,410 - -0.1 552,410 - -0.9 552,410 - +0.8 552,425 - -0.1 552,425 - -0.8 552,456 + +0.4 552,456 + -0.5 552,456 + -1.2 552,456 + -0.7 552,456 + -0.5 552,456 + -0.2 552,456 + +0.4 552,456 + -0.2 552,456 + +0.9 552,457 - +0.6 552,457 - -1.4 552,457 - -0.1 552,457 - +0.3 552,457 - -0.8 552,457 - -0.7 552,457 - -0.3 552,457 - -0.2 552,457 - +0.5 552,457 - -0.7 552,457 - -0.9 552,457 - +0.6 552,457 - +0.5 552,465 + -0.4 552,466 - +0.9 552,466 - -0.2 552,466 - -0.6 552,520 + -0.5 552,520 + +2.4 552,520 + -0.7 552,520 + +0.3 552,520 + -0.3 552,520 + -1.6 552,521 - -0.4 552,521 - -1.7 552,521 - -0.4 552,521 - +1.3 552,566 + +0.8 552,566 + -0.2 552,567 - +0.4 552,567 - -0.6 552,737 + Ac3H11_2310 0.12 +2.4 552,738 - Ac3H11_2310 0.12 +0.4 552,738 - Ac3H11_2310 0.12 +0.6 552,769 - Ac3H11_2310 0.15 +0.1 552,795 + Ac3H11_2310 0.17 +0.7 552,795 + Ac3H11_2310 0.17 +0.3 552,795 + Ac3H11_2310 0.17 -0.5 552,796 - Ac3H11_2310 0.17 -0.4 552,796 - Ac3H11_2310 0.17 -0.2 552,796 - Ac3H11_2310 0.17 +1.4 552,796 - Ac3H11_2310 0.17 +0.3
Or see this region's nucleotide sequence