Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08020

Experiment: L-Threonine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS08020 and AZOBR_RS08025 are separated by 37 nucleotidesAZOBR_RS08025 and AZOBR_RS08030 are separated by 258 nucleotides AZOBR_RS08020: AZOBR_RS08020 - D-alanine dehydrogenase (EC 1.4.99.-) (from data), at 1,691,817 to 1,693,127 _RS08020 AZOBR_RS08025: AZOBR_RS08025 - hypothetical protein, at 1,693,165 to 1,693,800 _RS08025 AZOBR_RS08030: AZOBR_RS08030 - glutamine amidotransferase, at 1,694,059 to 1,694,631 _RS08030 Position (kb) 1691 1692 1693 1694Strain fitness (log2 ratio) -1 0 1at 1691.646 kb on + strandat 1691.657 kb on - strandat 1691.865 kb on + strandat 1691.937 kb on + strandat 1691.937 kb on + strandat 1691.938 kb on - strandat 1691.938 kb on - strandat 1692.117 kb on + strand, within AZOBR_RS08020at 1692.118 kb on - strand, within AZOBR_RS08020at 1692.156 kb on + strand, within AZOBR_RS08020at 1692.156 kb on + strand, within AZOBR_RS08020at 1692.156 kb on + strand, within AZOBR_RS08020at 1692.306 kb on + strand, within AZOBR_RS08020at 1692.474 kb on + strand, within AZOBR_RS08020at 1692.475 kb on - strand, within AZOBR_RS08020at 1692.475 kb on - strand, within AZOBR_RS08020at 1692.561 kb on + strand, within AZOBR_RS08020at 1692.561 kb on + strand, within AZOBR_RS08020at 1692.562 kb on - strand, within AZOBR_RS08020at 1692.562 kb on - strand, within AZOBR_RS08020at 1692.562 kb on - strand, within AZOBR_RS08020at 1692.583 kb on - strand, within AZOBR_RS08020at 1692.583 kb on - strand, within AZOBR_RS08020at 1692.583 kb on - strand, within AZOBR_RS08020at 1692.642 kb on + strand, within AZOBR_RS08020at 1692.643 kb on - strand, within AZOBR_RS08020at 1693.166 kb on + strandat 1693.328 kb on + strand, within AZOBR_RS08025at 1693.524 kb on + strand, within AZOBR_RS08025at 1693.524 kb on + strand, within AZOBR_RS08025at 1693.524 kb on + strand, within AZOBR_RS08025at 1693.778 kb on + strandat 1693.922 kb on + strandat 1693.922 kb on + strandat 1694.016 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (N)
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1,691,646 + +0.1
1,691,657 - +0.0
1,691,865 + +0.6
1,691,937 + +1.2
1,691,937 + +1.0
1,691,938 - +0.7
1,691,938 - +0.7
1,692,117 + AZOBR_RS08020 0.23 +0.2
1,692,118 - AZOBR_RS08020 0.23 +0.3
1,692,156 + AZOBR_RS08020 0.26 -0.8
1,692,156 + AZOBR_RS08020 0.26 +1.3
1,692,156 + AZOBR_RS08020 0.26 +0.2
1,692,306 + AZOBR_RS08020 0.37 +0.7
1,692,474 + AZOBR_RS08020 0.50 +0.2
1,692,475 - AZOBR_RS08020 0.50 +0.9
1,692,475 - AZOBR_RS08020 0.50 -0.4
1,692,561 + AZOBR_RS08020 0.57 +0.7
1,692,561 + AZOBR_RS08020 0.57 +1.1
1,692,562 - AZOBR_RS08020 0.57 +0.4
1,692,562 - AZOBR_RS08020 0.57 +0.6
1,692,562 - AZOBR_RS08020 0.57 +0.9
1,692,583 - AZOBR_RS08020 0.58 +1.2
1,692,583 - AZOBR_RS08020 0.58 +0.8
1,692,583 - AZOBR_RS08020 0.58 +0.6
1,692,642 + AZOBR_RS08020 0.63 +1.0
1,692,643 - AZOBR_RS08020 0.63 +0.5
1,693,166 + +0.4
1,693,328 + AZOBR_RS08025 0.26 -0.2
1,693,524 + AZOBR_RS08025 0.56 -0.2
1,693,524 + AZOBR_RS08025 0.56 +0.0
1,693,524 + AZOBR_RS08025 0.56 -0.1
1,693,778 + +0.2
1,693,922 + -0.7
1,693,922 + +0.0
1,694,016 - -0.1

Or see this region's nucleotide sequence