Experiment: L-Threonine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04630 and AZOBR_RS04635 overlap by 4 nucleotides AZOBR_RS04635 and AZOBR_RS04640 are separated by 116 nucleotides
AZOBR_RS04630: AZOBR_RS04630 - oxidoreductase, at 974,949 to 976,034
_RS04630
AZOBR_RS04635: AZOBR_RS04635 - oxidoreductase, at 976,031 to 976,774
_RS04635
AZOBR_RS04640: AZOBR_RS04640 - C4-dicarboxylate ABC transporter, at 976,891 to 978,171
_RS04640
Position (kb) 976
977 Strain fitness (log2 ratio) -2
-1
0
1 at 975.142 kb on + strand, within AZOBR_RS04630 at 975.432 kb on + strand, within AZOBR_RS04630 at 975.432 kb on + strand, within AZOBR_RS04630 at 975.432 kb on + strand, within AZOBR_RS04630 at 975.448 kb on + strand, within AZOBR_RS04630 at 975.466 kb on + strand, within AZOBR_RS04630 at 975.467 kb on - strand, within AZOBR_RS04630 at 975.467 kb on - strand, within AZOBR_RS04630 at 975.856 kb on + strand, within AZOBR_RS04630 at 975.856 kb on + strand, within AZOBR_RS04630 at 975.857 kb on - strand, within AZOBR_RS04630 at 975.857 kb on - strand, within AZOBR_RS04630 at 975.857 kb on - strand, within AZOBR_RS04630 at 976.101 kb on + strand at 976.101 kb on + strand at 976.102 kb on - strand at 976.102 kb on - strand at 976.202 kb on + strand, within AZOBR_RS04635 at 976.202 kb on + strand, within AZOBR_RS04635 at 976.203 kb on - strand, within AZOBR_RS04635 at 976.761 kb on - strand at 976.761 kb on - strand at 976.761 kb on - strand at 976.997 kb on + strand at 976.997 kb on + strand at 976.997 kb on + strand at 976.998 kb on - strand at 976.998 kb on - strand at 976.998 kb on - strand at 977.304 kb on - strand, within AZOBR_RS04640 at 977.304 kb on - strand, within AZOBR_RS04640 at 977.406 kb on - strand, within AZOBR_RS04640 at 977.432 kb on + strand, within AZOBR_RS04640 at 977.432 kb on + strand, within AZOBR_RS04640 at 977.433 kb on - strand, within AZOBR_RS04640 at 977.606 kb on + strand, within AZOBR_RS04640
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (N) remove 975,142 + AZOBR_RS04630 0.18 +0.3 975,432 + AZOBR_RS04630 0.44 -0.1 975,432 + AZOBR_RS04630 0.44 -0.8 975,432 + AZOBR_RS04630 0.44 -0.3 975,448 + AZOBR_RS04630 0.46 +0.3 975,466 + AZOBR_RS04630 0.48 -0.6 975,467 - AZOBR_RS04630 0.48 +0.0 975,467 - AZOBR_RS04630 0.48 +0.1 975,856 + AZOBR_RS04630 0.84 +0.8 975,856 + AZOBR_RS04630 0.84 -0.4 975,857 - AZOBR_RS04630 0.84 -2.0 975,857 - AZOBR_RS04630 0.84 +0.5 975,857 - AZOBR_RS04630 0.84 -0.4 976,101 + +0.9 976,101 + +0.1 976,102 - +0.6 976,102 - +0.7 976,202 + AZOBR_RS04635 0.23 +1.7 976,202 + AZOBR_RS04635 0.23 -0.7 976,203 - AZOBR_RS04635 0.23 -0.3 976,761 - +1.3 976,761 - +0.6 976,761 - -0.1 976,997 + +0.1 976,997 + -0.7 976,997 + -0.2 976,998 - -0.1 976,998 - -0.1 976,998 - -0.8 977,304 - AZOBR_RS04640 0.32 +0.1 977,304 - AZOBR_RS04640 0.32 -0.4 977,406 - AZOBR_RS04640 0.40 +0.2 977,432 + AZOBR_RS04640 0.42 +0.4 977,432 + AZOBR_RS04640 0.42 -0.1 977,433 - AZOBR_RS04640 0.42 -0.1 977,606 + AZOBR_RS04640 0.56 +0.8
Or see this region's nucleotide sequence