Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27070

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_27065 and AO353_27070 are separated by 2 nucleotidesAO353_27070 and AO353_27075 overlap by 8 nucleotides AO353_27065: AO353_27065 - cytochrome C oxidase Cbb3, at 5,929,320 to 5,930,567 _27065 AO353_27070: AO353_27070 - (2Fe-2S)-binding protein, at 5,930,570 to 5,931,109 _27070 AO353_27075: AO353_27075 - aldehyde oxidase, at 5,931,102 to 5,933,933 _27075 Position (kb) 5930 5931 5932Strain fitness (log2 ratio) -2 -1 0 1 2at 5929.645 kb on + strand, within AO353_27065at 5929.646 kb on - strand, within AO353_27065at 5929.646 kb on - strand, within AO353_27065at 5929.788 kb on - strand, within AO353_27065at 5929.788 kb on - strand, within AO353_27065at 5929.821 kb on - strand, within AO353_27065at 5929.821 kb on - strand, within AO353_27065at 5929.821 kb on - strand, within AO353_27065at 5929.821 kb on - strand, within AO353_27065at 5929.821 kb on - strand, within AO353_27065at 5929.918 kb on + strand, within AO353_27065at 5929.918 kb on + strand, within AO353_27065at 5929.919 kb on - strand, within AO353_27065at 5929.919 kb on - strand, within AO353_27065at 5930.011 kb on - strand, within AO353_27065at 5930.011 kb on - strand, within AO353_27065at 5930.023 kb on + strand, within AO353_27065at 5930.087 kb on - strand, within AO353_27065at 5930.087 kb on - strand, within AO353_27065at 5930.185 kb on + strand, within AO353_27065at 5930.228 kb on - strand, within AO353_27065at 5930.236 kb on + strand, within AO353_27065at 5930.314 kb on + strand, within AO353_27065at 5930.315 kb on - strand, within AO353_27065at 5930.359 kb on + strand, within AO353_27065at 5930.359 kb on + strand, within AO353_27065at 5930.359 kb on + strandat 5930.359 kb on + strand, within AO353_27065at 5930.360 kb on - strand, within AO353_27065at 5930.360 kb on - strand, within AO353_27065at 5930.360 kb on - strand, within AO353_27065at 5930.360 kb on - strand, within AO353_27065at 5930.458 kb on + strandat 5930.459 kb on - strandat 5930.459 kb on - strandat 5930.623 kb on - strandat 5930.623 kb on - strandat 5930.623 kb on - strandat 5930.623 kb on - strandat 5930.623 kb on - strandat 5930.623 kb on - strandat 5930.623 kb on - strandat 5930.732 kb on + strand, within AO353_27070at 5930.766 kb on + strand, within AO353_27070at 5930.766 kb on + strand, within AO353_27070at 5930.766 kb on + strand, within AO353_27070at 5930.766 kb on + strand, within AO353_27070at 5930.767 kb on - strand, within AO353_27070at 5930.767 kb on - strand, within AO353_27070at 5930.767 kb on - strand, within AO353_27070at 5930.889 kb on + strand, within AO353_27070at 5930.889 kb on + strand, within AO353_27070at 5930.889 kb on + strand, within AO353_27070at 5930.890 kb on - strand, within AO353_27070at 5930.890 kb on - strand, within AO353_27070at 5930.890 kb on - strand, within AO353_27070at 5930.890 kb on - strand, within AO353_27070at 5930.915 kb on + strand, within AO353_27070at 5930.915 kb on + strand, within AO353_27070at 5930.915 kb on + strand, within AO353_27070at 5930.915 kb on + strand, within AO353_27070at 5930.915 kb on + strand, within AO353_27070at 5930.915 kb on + strand, within AO353_27070at 5930.915 kb on + strand, within AO353_27070at 5930.915 kb on + strand, within AO353_27070at 5930.915 kb on + strand, within AO353_27070at 5930.916 kb on - strand, within AO353_27070at 5930.916 kb on - strand, within AO353_27070at 5930.916 kb on - strand, within AO353_27070at 5930.916 kb on - strand, within AO353_27070at 5930.916 kb on - strand, within AO353_27070at 5930.916 kb on - strand, within AO353_27070at 5930.916 kb on - strand, within AO353_27070at 5931.024 kb on + strand, within AO353_27070at 5931.025 kb on - strand, within AO353_27070at 5931.104 kb on - strandat 5931.140 kb on + strandat 5931.141 kb on - strandat 5931.141 kb on - strandat 5931.358 kb on + strandat 5931.359 kb on - strandat 5931.541 kb on + strand, within AO353_27075at 5931.541 kb on + strand, within AO353_27075at 5931.541 kb on + strand, within AO353_27075at 5931.542 kb on - strand, within AO353_27075at 5931.542 kb on - strand, within AO353_27075at 5931.542 kb on - strand, within AO353_27075at 5931.544 kb on + strand, within AO353_27075at 5931.544 kb on + strand, within AO353_27075at 5931.544 kb on + strand, within AO353_27075at 5931.545 kb on - strand, within AO353_27075at 5931.545 kb on - strand, within AO353_27075at 5931.545 kb on - strand, within AO353_27075at 5931.545 kb on - strand, within AO353_27075at 5931.545 kb on - strand, within AO353_27075at 5931.545 kb on - strand, within AO353_27075at 5931.661 kb on + strand, within AO353_27075at 5931.662 kb on - strand, within AO353_27075at 5931.662 kb on - strand, within AO353_27075at 5931.662 kb on - strand, within AO353_27075at 5931.662 kb on - strand, within AO353_27075at 5931.662 kb on - strand, within AO353_27075at 5931.715 kb on + strand, within AO353_27075at 5931.715 kb on + strand, within AO353_27075at 5931.716 kb on - strand, within AO353_27075at 5931.716 kb on - strand, within AO353_27075at 5931.716 kb on - strand, within AO353_27075at 5931.716 kb on - strand, within AO353_27075at 5931.880 kb on + strand, within AO353_27075at 5931.880 kb on + strand, within AO353_27075at 5931.881 kb on - strand, within AO353_27075at 5931.881 kb on - strand, within AO353_27075at 5931.881 kb on - strand, within AO353_27075at 5931.881 kb on - strand, within AO353_27075at 5931.881 kb on - strand, within AO353_27075at 5931.939 kb on + strand, within AO353_27075at 5931.939 kb on + strand, within AO353_27075at 5931.940 kb on - strand, within AO353_27075at 5931.940 kb on - strand, within AO353_27075at 5931.991 kb on + strand, within AO353_27075at 5931.991 kb on + strand, within AO353_27075at 5931.992 kb on - strand, within AO353_27075at 5931.992 kb on - strand, within AO353_27075at 5931.992 kb on - strand, within AO353_27075at 5931.994 kb on + strand, within AO353_27075at 5931.994 kb on + strand, within AO353_27075at 5931.994 kb on + strand, within AO353_27075at 5931.995 kb on - strand, within AO353_27075at 5932.087 kb on + strand, within AO353_27075at 5932.087 kb on + strand, within AO353_27075

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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5,929,645 + AO353_27065 0.26 -1.0
5,929,646 - AO353_27065 0.26 +0.6
5,929,646 - AO353_27065 0.26 +0.1
5,929,788 - AO353_27065 0.38 +0.5
5,929,788 - AO353_27065 0.38 -0.4
5,929,821 - AO353_27065 0.40 -0.1
5,929,821 - AO353_27065 0.40 -0.7
5,929,821 - AO353_27065 0.40 -0.3
5,929,821 - AO353_27065 0.40 +0.4
5,929,821 - AO353_27065 0.40 +0.7
5,929,918 + AO353_27065 0.48 -1.3
5,929,918 + AO353_27065 0.48 +1.5
5,929,919 - AO353_27065 0.48 +0.0
5,929,919 - AO353_27065 0.48 +1.0
5,930,011 - AO353_27065 0.55 +0.6
5,930,011 - AO353_27065 0.55 +0.1
5,930,023 + AO353_27065 0.56 -0.2
5,930,087 - AO353_27065 0.61 +0.9
5,930,087 - AO353_27065 0.61 -0.3
5,930,185 + AO353_27065 0.69 -0.5
5,930,228 - AO353_27065 0.73 +1.5
5,930,236 + AO353_27065 0.73 -1.0
5,930,314 + AO353_27065 0.80 -0.6
5,930,315 - AO353_27065 0.80 -0.1
5,930,359 + AO353_27065 0.83 +0.1
5,930,359 + AO353_27065 0.83 -1.0
5,930,359 + -0.4
5,930,359 + AO353_27065 0.83 -1.9
5,930,360 - AO353_27065 0.83 -1.7
5,930,360 - AO353_27065 0.83 +0.9
5,930,360 - AO353_27065 0.83 +0.4
5,930,360 - AO353_27065 0.83 +1.1
5,930,458 + +0.3
5,930,459 - -0.9
5,930,459 - +0.3
5,930,623 - -0.5
5,930,623 - -0.9
5,930,623 - -1.8
5,930,623 - +1.1
5,930,623 - -0.1
5,930,623 - -0.4
5,930,623 - -0.9
5,930,732 + AO353_27070 0.30 +0.1
5,930,766 + AO353_27070 0.36 +0.7
5,930,766 + AO353_27070 0.36 +0.6
5,930,766 + AO353_27070 0.36 -1.7
5,930,766 + AO353_27070 0.36 +0.6
5,930,767 - AO353_27070 0.36 +1.1
5,930,767 - AO353_27070 0.36 -0.5
5,930,767 - AO353_27070 0.36 -2.2
5,930,889 + AO353_27070 0.59 -1.4
5,930,889 + AO353_27070 0.59 -0.2
5,930,889 + AO353_27070 0.59 -0.9
5,930,890 - AO353_27070 0.59 -1.1
5,930,890 - AO353_27070 0.59 -0.4
5,930,890 - AO353_27070 0.59 -0.2
5,930,890 - AO353_27070 0.59 -0.9
5,930,915 + AO353_27070 0.64 -1.0
5,930,915 + AO353_27070 0.64 -0.2
5,930,915 + AO353_27070 0.64 -1.0
5,930,915 + AO353_27070 0.64 -0.4
5,930,915 + AO353_27070 0.64 -1.9
5,930,915 + AO353_27070 0.64 +0.1
5,930,915 + AO353_27070 0.64 +0.1
5,930,915 + AO353_27070 0.64 -0.3
5,930,915 + AO353_27070 0.64 +0.1
5,930,916 - AO353_27070 0.64 -0.7
5,930,916 - AO353_27070 0.64 -0.9
5,930,916 - AO353_27070 0.64 +0.4
5,930,916 - AO353_27070 0.64 -0.1
5,930,916 - AO353_27070 0.64 -0.1
5,930,916 - AO353_27070 0.64 -0.9
5,930,916 - AO353_27070 0.64 +1.9
5,931,024 + AO353_27070 0.84 -1.0
5,931,025 - AO353_27070 0.84 +0.1
5,931,104 - +1.3
5,931,140 + -1.1
5,931,141 - -0.1
5,931,141 - -1.1
5,931,358 + +0.1
5,931,359 - +1.1
5,931,541 + AO353_27075 0.16 +0.6
5,931,541 + AO353_27075 0.16 -0.7
5,931,541 + AO353_27075 0.16 -0.3
5,931,542 - AO353_27075 0.16 -0.0
5,931,542 - AO353_27075 0.16 -0.5
5,931,542 - AO353_27075 0.16 -0.1
5,931,544 + AO353_27075 0.16 +1.5
5,931,544 + AO353_27075 0.16 +1.2
5,931,544 + AO353_27075 0.16 +1.1
5,931,545 - AO353_27075 0.16 +0.1
5,931,545 - AO353_27075 0.16 -0.1
5,931,545 - AO353_27075 0.16 -0.0
5,931,545 - AO353_27075 0.16 +0.7
5,931,545 - AO353_27075 0.16 -0.1
5,931,545 - AO353_27075 0.16 -0.4
5,931,661 + AO353_27075 0.20 -0.3
5,931,662 - AO353_27075 0.20 +0.7
5,931,662 - AO353_27075 0.20 -0.4
5,931,662 - AO353_27075 0.20 -1.2
5,931,662 - AO353_27075 0.20 +0.6
5,931,662 - AO353_27075 0.20 -1.3
5,931,715 + AO353_27075 0.22 +2.1
5,931,715 + AO353_27075 0.22 -0.7
5,931,716 - AO353_27075 0.22 +0.5
5,931,716 - AO353_27075 0.22 +1.1
5,931,716 - AO353_27075 0.22 +0.9
5,931,716 - AO353_27075 0.22 +1.8
5,931,880 + AO353_27075 0.27 +1.3
5,931,880 + AO353_27075 0.27 +1.1
5,931,881 - AO353_27075 0.28 -1.7
5,931,881 - AO353_27075 0.28 -0.7
5,931,881 - AO353_27075 0.28 +0.2
5,931,881 - AO353_27075 0.28 +0.4
5,931,881 - AO353_27075 0.28 -0.2
5,931,939 + AO353_27075 0.30 +0.1
5,931,939 + AO353_27075 0.30 -0.2
5,931,940 - AO353_27075 0.30 -1.0
5,931,940 - AO353_27075 0.30 -0.9
5,931,991 + AO353_27075 0.31 -0.5
5,931,991 + AO353_27075 0.31 +0.3
5,931,992 - AO353_27075 0.31 +1.0
5,931,992 - AO353_27075 0.31 -1.5
5,931,992 - AO353_27075 0.31 -0.3
5,931,994 + AO353_27075 0.31 +1.6
5,931,994 + AO353_27075 0.31 -0.0
5,931,994 + AO353_27075 0.31 -0.7
5,931,995 - AO353_27075 0.32 +1.1
5,932,087 + AO353_27075 0.35 -0.3
5,932,087 + AO353_27075 0.35 +1.1

Or see this region's nucleotide sequence