Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26715

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26710 and AO353_26715 are separated by 25 nucleotidesAO353_26715 and AO353_26720 are separated by 14 nucleotides AO353_26710: AO353_26710 - citrate-proton symporter, at 5,846,082 to 5,847,386 _26710 AO353_26715: AO353_26715 - molybdenum ABC transporter substrate-binding protein, at 5,847,412 to 5,848,188 _26715 AO353_26720: AO353_26720 - LysR family transcriptional regulator, at 5,848,203 to 5,849,120 _26720 Position (kb) 5847 5848 5849Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5846.508 kb on + strand, within AO353_26710at 5846.508 kb on + strand, within AO353_26710at 5846.509 kb on - strand, within AO353_26710at 5846.697 kb on - strand, within AO353_26710at 5846.850 kb on + strand, within AO353_26710at 5847.057 kb on + strand, within AO353_26710at 5847.057 kb on + strand, within AO353_26710at 5847.058 kb on - strand, within AO353_26710at 5847.058 kb on - strand, within AO353_26710at 5847.058 kb on - strand, within AO353_26710at 5847.058 kb on - strand, within AO353_26710at 5847.130 kb on - strand, within AO353_26710at 5847.130 kb on - strand, within AO353_26710at 5847.130 kb on - strand, within AO353_26710at 5847.205 kb on - strand, within AO353_26710at 5847.224 kb on - strand, within AO353_26710at 5847.224 kb on - strand, within AO353_26710at 5847.268 kb on - strandat 5847.268 kb on - strandat 5847.339 kb on + strandat 5847.339 kb on + strandat 5847.339 kb on + strandat 5847.340 kb on - strandat 5847.340 kb on - strandat 5847.340 kb on - strandat 5847.346 kb on - strandat 5847.367 kb on + strandat 5847.367 kb on + strandat 5847.368 kb on - strandat 5847.384 kb on + strandat 5847.385 kb on - strandat 5847.385 kb on - strandat 5847.407 kb on + strandat 5847.422 kb on + strandat 5847.526 kb on + strand, within AO353_26715at 5847.526 kb on + strand, within AO353_26715at 5847.527 kb on - strand, within AO353_26715at 5847.527 kb on - strand, within AO353_26715at 5847.528 kb on + strand, within AO353_26715at 5847.528 kb on + strand, within AO353_26715at 5847.529 kb on - strand, within AO353_26715at 5847.529 kb on - strand, within AO353_26715at 5847.536 kb on + strand, within AO353_26715at 5847.537 kb on - strand, within AO353_26715at 5847.835 kb on + strand, within AO353_26715at 5847.836 kb on - strand, within AO353_26715at 5847.859 kb on + strand, within AO353_26715at 5847.859 kb on + strand, within AO353_26715at 5847.859 kb on + strand, within AO353_26715at 5847.859 kb on + strand, within AO353_26715at 5847.859 kb on + strand, within AO353_26715at 5847.860 kb on - strand, within AO353_26715at 5847.860 kb on - strand, within AO353_26715at 5847.968 kb on - strand, within AO353_26715at 5848.124 kb on - strandat 5848.244 kb on + strandat 5848.341 kb on + strand, within AO353_26720at 5848.430 kb on + strand, within AO353_26720at 5848.430 kb on + strand, within AO353_26720at 5848.431 kb on - strand, within AO353_26720at 5848.431 kb on - strand, within AO353_26720at 5848.537 kb on + strand, within AO353_26720at 5848.537 kb on + strand, within AO353_26720at 5848.537 kb on + strand, within AO353_26720at 5848.537 kb on + strand, within AO353_26720at 5848.537 kb on + strand, within AO353_26720at 5848.537 kb on + strand, within AO353_26720at 5848.537 kb on + strand, within AO353_26720at 5848.537 kb on + strand, within AO353_26720at 5848.537 kb on + strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.549 kb on + strand, within AO353_26720at 5848.550 kb on - strand, within AO353_26720at 5848.615 kb on + strandat 5848.615 kb on + strand, within AO353_26720at 5848.615 kb on + strand, within AO353_26720at 5848.615 kb on + strand, within AO353_26720at 5848.615 kb on + strand, within AO353_26720at 5848.615 kb on + strand, within AO353_26720at 5848.616 kb on - strand, within AO353_26720at 5848.616 kb on - strand, within AO353_26720at 5848.616 kb on - strand, within AO353_26720at 5848.616 kb on - strand, within AO353_26720at 5848.771 kb on + strand, within AO353_26720at 5848.771 kb on + strand, within AO353_26720at 5848.772 kb on - strand, within AO353_26720at 5848.798 kb on + strand, within AO353_26720at 5848.798 kb on + strand, within AO353_26720at 5848.798 kb on + strand, within AO353_26720at 5848.798 kb on + strand, within AO353_26720at 5848.798 kb on + strand, within AO353_26720at 5848.798 kb on + strand, within AO353_26720at 5848.798 kb on + strand, within AO353_26720at 5848.798 kb on + strand, within AO353_26720at 5848.798 kb on + strand, within AO353_26720at 5848.799 kb on - strand, within AO353_26720at 5848.799 kb on - strand, within AO353_26720at 5848.799 kb on - strand, within AO353_26720at 5848.799 kb on - strand, within AO353_26720at 5848.799 kb on - strand, within AO353_26720at 5848.799 kb on - strand, within AO353_26720at 5848.799 kb on - strand, within AO353_26720at 5848.799 kb on - strand, within AO353_26720at 5848.802 kb on - strand, within AO353_26720at 5848.834 kb on + strand, within AO353_26720at 5848.835 kb on - strand, within AO353_26720at 5849.155 kb on + strandat 5849.155 kb on + strandat 5849.156 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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5,846,508 + AO353_26710 0.33 -0.8
5,846,508 + AO353_26710 0.33 -1.6
5,846,509 - AO353_26710 0.33 +0.2
5,846,697 - AO353_26710 0.47 +0.1
5,846,850 + AO353_26710 0.59 +0.9
5,847,057 + AO353_26710 0.75 -1.4
5,847,057 + AO353_26710 0.75 +0.5
5,847,058 - AO353_26710 0.75 +0.1
5,847,058 - AO353_26710 0.75 +0.1
5,847,058 - AO353_26710 0.75 +0.1
5,847,058 - AO353_26710 0.75 -0.9
5,847,130 - AO353_26710 0.80 -0.1
5,847,130 - AO353_26710 0.80 +0.8
5,847,130 - AO353_26710 0.80 +0.7
5,847,205 - AO353_26710 0.86 +1.1
5,847,224 - AO353_26710 0.88 +1.0
5,847,224 - AO353_26710 0.88 +1.0
5,847,268 - -0.7
5,847,268 - -0.8
5,847,339 + -0.2
5,847,339 + +0.7
5,847,339 + -0.6
5,847,340 - +0.2
5,847,340 - +0.8
5,847,340 - +0.4
5,847,346 - -1.4
5,847,367 + +0.2
5,847,367 + +0.1
5,847,368 - +1.8
5,847,384 + -0.2
5,847,385 - +0.8
5,847,385 - +0.1
5,847,407 + +0.8
5,847,422 + -0.3
5,847,526 + AO353_26715 0.15 -1.5
5,847,526 + AO353_26715 0.15 -1.9
5,847,527 - AO353_26715 0.15 -0.3
5,847,527 - AO353_26715 0.15 +1.8
5,847,528 + AO353_26715 0.15 +0.5
5,847,528 + AO353_26715 0.15 -0.6
5,847,529 - AO353_26715 0.15 -0.9
5,847,529 - AO353_26715 0.15 -1.3
5,847,536 + AO353_26715 0.16 -1.7
5,847,537 - AO353_26715 0.16 -0.1
5,847,835 + AO353_26715 0.54 -0.3
5,847,836 - AO353_26715 0.55 -0.5
5,847,859 + AO353_26715 0.58 -1.0
5,847,859 + AO353_26715 0.58 +0.4
5,847,859 + AO353_26715 0.58 -1.4
5,847,859 + AO353_26715 0.58 -0.5
5,847,859 + AO353_26715 0.58 -0.2
5,847,860 - AO353_26715 0.58 -3.0
5,847,860 - AO353_26715 0.58 +1.1
5,847,968 - AO353_26715 0.72 +0.2
5,848,124 - -2.1
5,848,244 + +1.6
5,848,341 + AO353_26720 0.15 -0.4
5,848,430 + AO353_26720 0.25 -1.1
5,848,430 + AO353_26720 0.25 -1.9
5,848,431 - AO353_26720 0.25 -1.5
5,848,431 - AO353_26720 0.25 -1.2
5,848,537 + AO353_26720 0.36 -1.0
5,848,537 + AO353_26720 0.36 +1.8
5,848,537 + AO353_26720 0.36 -1.5
5,848,537 + AO353_26720 0.36 -1.0
5,848,537 + AO353_26720 0.36 -1.3
5,848,537 + AO353_26720 0.36 +0.7
5,848,537 + AO353_26720 0.36 +1.7
5,848,537 + AO353_26720 0.36 -0.8
5,848,537 + AO353_26720 0.36 -1.0
5,848,538 - AO353_26720 0.36 -0.4
5,848,538 - AO353_26720 0.36 -0.1
5,848,538 - AO353_26720 0.36 -0.6
5,848,538 - AO353_26720 0.36 +0.1
5,848,538 - AO353_26720 0.36 +1.1
5,848,538 - AO353_26720 0.36 +0.5
5,848,538 - AO353_26720 0.36 -1.5
5,848,538 - AO353_26720 0.36 -1.2
5,848,538 - AO353_26720 0.36 -0.5
5,848,538 - AO353_26720 0.36 -0.5
5,848,538 - AO353_26720 0.36 +3.9
5,848,538 - AO353_26720 0.36 -1.7
5,848,538 - AO353_26720 0.36 -0.4
5,848,549 + AO353_26720 0.38 +0.4
5,848,550 - AO353_26720 0.38 -0.6
5,848,615 + +0.7
5,848,615 + AO353_26720 0.45 +1.8
5,848,615 + AO353_26720 0.45 -2.3
5,848,615 + AO353_26720 0.45 -0.3
5,848,615 + AO353_26720 0.45 +0.6
5,848,615 + AO353_26720 0.45 +0.7
5,848,616 - AO353_26720 0.45 -1.5
5,848,616 - AO353_26720 0.45 +0.4
5,848,616 - AO353_26720 0.45 +1.1
5,848,616 - AO353_26720 0.45 +0.7
5,848,771 + AO353_26720 0.62 -0.6
5,848,771 + AO353_26720 0.62 -0.4
5,848,772 - AO353_26720 0.62 -1.2
5,848,798 + AO353_26720 0.65 +0.5
5,848,798 + AO353_26720 0.65 +0.4
5,848,798 + AO353_26720 0.65 +0.8
5,848,798 + AO353_26720 0.65 +0.1
5,848,798 + AO353_26720 0.65 +0.1
5,848,798 + AO353_26720 0.65 -1.2
5,848,798 + AO353_26720 0.65 -1.2
5,848,798 + AO353_26720 0.65 -0.8
5,848,798 + AO353_26720 0.65 +0.0
5,848,799 - AO353_26720 0.65 -0.5
5,848,799 - AO353_26720 0.65 +0.7
5,848,799 - AO353_26720 0.65 -0.1
5,848,799 - AO353_26720 0.65 -0.8
5,848,799 - AO353_26720 0.65 -0.6
5,848,799 - AO353_26720 0.65 -0.1
5,848,799 - AO353_26720 0.65 +0.6
5,848,799 - AO353_26720 0.65 -1.4
5,848,802 - AO353_26720 0.65 +0.4
5,848,834 + AO353_26720 0.69 +0.9
5,848,835 - AO353_26720 0.69 +1.1
5,849,155 + +0.7
5,849,155 + -0.5
5,849,156 - +1.5

Or see this region's nucleotide sequence