Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25120

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25115 and AO353_25120 are separated by 21 nucleotidesAO353_25120 and AO353_25125 overlap by 4 nucleotidesAO353_25125 and AO353_25130 are separated by 27 nucleotides AO353_25115: AO353_25115 - ABC transporter substrate-binding protein, at 5,539,944 to 5,541,218 _25115 AO353_25120: AO353_25120 - ABC transporter permease, at 5,541,240 to 5,542,202 _25120 AO353_25125: AO353_25125 - sugar ABC transporter permease, at 5,542,199 to 5,543,041 _25125 AO353_25130: AO353_25130 - ABC transporter, at 5,543,069 to 5,544,214 _25130 Position (kb) 5541 5542 5543Strain fitness (log2 ratio) -2 -1 0 1 2at 5540.289 kb on + strand, within AO353_25115at 5540.289 kb on + strand, within AO353_25115at 5540.305 kb on + strand, within AO353_25115at 5540.305 kb on + strand, within AO353_25115at 5540.305 kb on + strand, within AO353_25115at 5540.306 kb on - strand, within AO353_25115at 5540.306 kb on - strand, within AO353_25115at 5540.306 kb on - strand, within AO353_25115at 5540.306 kb on - strand, within AO353_25115at 5540.306 kb on - strand, within AO353_25115at 5540.306 kb on - strand, within AO353_25115at 5540.310 kb on - strand, within AO353_25115at 5540.370 kb on + strand, within AO353_25115at 5540.370 kb on + strand, within AO353_25115at 5540.370 kb on + strand, within AO353_25115at 5540.370 kb on + strand, within AO353_25115at 5540.371 kb on - strand, within AO353_25115at 5540.371 kb on - strand, within AO353_25115at 5540.371 kb on - strand, within AO353_25115at 5540.397 kb on + strand, within AO353_25115at 5540.397 kb on + strand, within AO353_25115at 5540.397 kb on + strand, within AO353_25115at 5540.496 kb on + strand, within AO353_25115at 5540.496 kb on + strand, within AO353_25115at 5540.500 kb on + strand, within AO353_25115at 5540.500 kb on + strand, within AO353_25115at 5540.500 kb on + strand, within AO353_25115at 5540.500 kb on + strand, within AO353_25115at 5540.500 kb on + strand, within AO353_25115at 5540.501 kb on - strand, within AO353_25115at 5540.501 kb on - strand, within AO353_25115at 5540.501 kb on - strand, within AO353_25115at 5540.501 kb on - strand, within AO353_25115at 5540.501 kb on - strand, within AO353_25115at 5540.501 kb on - strand, within AO353_25115at 5540.501 kb on - strand, within AO353_25115at 5540.534 kb on + strand, within AO353_25115at 5540.535 kb on - strand, within AO353_25115at 5540.535 kb on - strand, within AO353_25115at 5540.682 kb on + strandat 5540.683 kb on - strand, within AO353_25115at 5540.683 kb on - strand, within AO353_25115at 5540.683 kb on - strand, within AO353_25115at 5540.683 kb on - strand, within AO353_25115at 5540.707 kb on + strand, within AO353_25115at 5540.708 kb on - strand, within AO353_25115at 5540.739 kb on - strand, within AO353_25115at 5540.748 kb on + strand, within AO353_25115at 5540.749 kb on - strand, within AO353_25115at 5540.749 kb on - strand, within AO353_25115at 5540.749 kb on - strand, within AO353_25115at 5540.749 kb on - strand, within AO353_25115at 5540.881 kb on - strand, within AO353_25115at 5540.920 kb on - strand, within AO353_25115at 5540.920 kb on - strand, within AO353_25115at 5540.959 kb on + strand, within AO353_25115at 5540.967 kb on + strand, within AO353_25115at 5540.967 kb on + strand, within AO353_25115at 5540.968 kb on - strand, within AO353_25115at 5540.968 kb on - strand, within AO353_25115at 5540.968 kb on - strand, within AO353_25115at 5540.968 kb on - strand, within AO353_25115at 5540.968 kb on - strand, within AO353_25115at 5540.968 kb on - strand, within AO353_25115at 5541.024 kb on + strand, within AO353_25115at 5541.024 kb on + strand, within AO353_25115at 5541.024 kb on + strand, within AO353_25115at 5541.024 kb on + strand, within AO353_25115at 5541.025 kb on - strand, within AO353_25115at 5541.025 kb on - strand, within AO353_25115at 5541.025 kb on - strand, within AO353_25115at 5541.027 kb on + strand, within AO353_25115at 5541.027 kb on + strand, within AO353_25115at 5541.027 kb on + strand, within AO353_25115at 5541.093 kb on + strandat 5541.251 kb on + strandat 5541.254 kb on + strandat 5541.255 kb on - strandat 5541.301 kb on + strandat 5541.302 kb on - strandat 5541.448 kb on + strand, within AO353_25120at 5541.448 kb on + strand, within AO353_25120at 5541.448 kb on + strand, within AO353_25120at 5541.448 kb on + strand, within AO353_25120at 5541.462 kb on + strand, within AO353_25120at 5541.463 kb on - strand, within AO353_25120at 5541.463 kb on - strand, within AO353_25120at 5541.463 kb on - strand, within AO353_25120at 5541.463 kb on - strand, within AO353_25120at 5541.463 kb on - strand, within AO353_25120at 5541.601 kb on + strand, within AO353_25120at 5541.602 kb on - strand, within AO353_25120at 5541.665 kb on + strand, within AO353_25120at 5541.665 kb on + strand, within AO353_25120at 5541.665 kb on + strand, within AO353_25120at 5541.829 kb on + strand, within AO353_25120at 5541.829 kb on + strand, within AO353_25120at 5541.830 kb on - strand, within AO353_25120at 5541.830 kb on - strand, within AO353_25120at 5541.847 kb on + strand, within AO353_25120at 5541.886 kb on - strand, within AO353_25120at 5542.020 kb on + strand, within AO353_25120at 5542.020 kb on + strand, within AO353_25120at 5542.020 kb on + strand, within AO353_25120at 5542.020 kb on + strand, within AO353_25120at 5542.020 kb on + strand, within AO353_25120at 5542.020 kb on + strand, within AO353_25120at 5542.020 kb on + strand, within AO353_25120at 5542.020 kb on + strand, within AO353_25120at 5542.020 kb on + strand, within AO353_25120at 5542.020 kb on + strand, within AO353_25120at 5542.020 kb on + strand, within AO353_25120at 5542.021 kb on - strand, within AO353_25120at 5542.021 kb on - strand, within AO353_25120at 5542.021 kb on - strand, within AO353_25120at 5542.021 kb on - strandat 5542.021 kb on - strand, within AO353_25120at 5542.021 kb on - strand, within AO353_25120at 5542.021 kb on - strand, within AO353_25120at 5542.021 kb on - strand, within AO353_25120at 5542.021 kb on - strand, within AO353_25120at 5542.021 kb on - strandat 5542.021 kb on - strand, within AO353_25120at 5542.021 kb on - strand, within AO353_25120at 5542.021 kb on - strand, within AO353_25120at 5542.055 kb on + strand, within AO353_25120at 5542.055 kb on + strand, within AO353_25120at 5542.055 kb on + strand, within AO353_25120at 5542.055 kb on + strand, within AO353_25120at 5542.056 kb on - strand, within AO353_25120at 5542.056 kb on - strand, within AO353_25120at 5542.056 kb on - strand, within AO353_25120at 5542.056 kb on - strand, within AO353_25120at 5542.056 kb on - strand, within AO353_25120at 5542.056 kb on - strand, within AO353_25120at 5542.056 kb on - strand, within AO353_25120at 5542.056 kb on - strand, within AO353_25120at 5542.056 kb on - strand, within AO353_25120at 5542.056 kb on - strand, within AO353_25120at 5542.056 kb on - strand, within AO353_25120at 5542.056 kb on - strand, within AO353_25120at 5542.066 kb on - strand, within AO353_25120at 5542.161 kb on + strandat 5542.161 kb on + strandat 5542.161 kb on + strandat 5542.161 kb on + strandat 5542.162 kb on - strandat 5542.162 kb on - strandat 5542.162 kb on - strandat 5542.168 kb on - strandat 5542.271 kb on + strandat 5542.271 kb on + strandat 5542.271 kb on + strandat 5542.271 kb on + strandat 5542.272 kb on - strandat 5542.272 kb on - strandat 5542.272 kb on - strandat 5542.289 kb on + strand, within AO353_25125at 5542.289 kb on + strand, within AO353_25125at 5542.290 kb on - strand, within AO353_25125at 5542.290 kb on - strand, within AO353_25125at 5542.290 kb on - strandat 5542.343 kb on + strand, within AO353_25125at 5542.343 kb on + strand, within AO353_25125at 5542.344 kb on - strand, within AO353_25125at 5542.344 kb on - strand, within AO353_25125at 5542.373 kb on + strand, within AO353_25125at 5542.374 kb on - strand, within AO353_25125at 5542.521 kb on + strand, within AO353_25125at 5542.566 kb on + strand, within AO353_25125at 5542.567 kb on - strand, within AO353_25125at 5542.607 kb on + strand, within AO353_25125at 5542.607 kb on + strand, within AO353_25125at 5542.607 kb on + strand, within AO353_25125at 5542.608 kb on - strand, within AO353_25125at 5542.608 kb on - strand, within AO353_25125at 5542.637 kb on + strand, within AO353_25125at 5542.637 kb on + strand, within AO353_25125at 5542.637 kb on + strand, within AO353_25125at 5542.637 kb on + strand, within AO353_25125at 5542.637 kb on + strand, within AO353_25125at 5542.803 kb on + strand, within AO353_25125at 5542.804 kb on - strand, within AO353_25125at 5542.813 kb on + strand, within AO353_25125at 5543.053 kb on + strandat 5543.053 kb on + strandat 5543.053 kb on + strandat 5543.053 kb on + strandat 5543.054 kb on - strandat 5543.086 kb on - strandat 5543.086 kb on - strandat 5543.086 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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5,540,289 + AO353_25115 0.27 +0.7
5,540,289 + AO353_25115 0.27 -0.2
5,540,305 + AO353_25115 0.28 +0.7
5,540,305 + AO353_25115 0.28 -0.7
5,540,305 + AO353_25115 0.28 +0.1
5,540,306 - AO353_25115 0.28 +0.7
5,540,306 - AO353_25115 0.28 +1.1
5,540,306 - AO353_25115 0.28 -1.3
5,540,306 - AO353_25115 0.28 -0.7
5,540,306 - AO353_25115 0.28 -2.1
5,540,306 - AO353_25115 0.28 -0.9
5,540,310 - AO353_25115 0.29 -1.1
5,540,370 + AO353_25115 0.33 -0.3
5,540,370 + AO353_25115 0.33 -0.3
5,540,370 + AO353_25115 0.33 +0.5
5,540,370 + AO353_25115 0.33 -1.7
5,540,371 - AO353_25115 0.33 -1.0
5,540,371 - AO353_25115 0.33 +0.7
5,540,371 - AO353_25115 0.33 +1.1
5,540,397 + AO353_25115 0.36 -0.2
5,540,397 + AO353_25115 0.36 +0.2
5,540,397 + AO353_25115 0.36 +0.3
5,540,496 + AO353_25115 0.43 +1.7
5,540,496 + AO353_25115 0.43 -0.2
5,540,500 + AO353_25115 0.44 +0.1
5,540,500 + AO353_25115 0.44 -1.7
5,540,500 + AO353_25115 0.44 +0.6
5,540,500 + AO353_25115 0.44 +1.1
5,540,500 + AO353_25115 0.44 -0.3
5,540,501 - AO353_25115 0.44 -0.2
5,540,501 - AO353_25115 0.44 +1.9
5,540,501 - AO353_25115 0.44 +0.5
5,540,501 - AO353_25115 0.44 +1.5
5,540,501 - AO353_25115 0.44 -0.5
5,540,501 - AO353_25115 0.44 +0.2
5,540,501 - AO353_25115 0.44 -0.5
5,540,534 + AO353_25115 0.46 +0.3
5,540,535 - AO353_25115 0.46 -0.7
5,540,535 - AO353_25115 0.46 -1.5
5,540,682 + +1.5
5,540,683 - AO353_25115 0.58 +1.1
5,540,683 - AO353_25115 0.58 +1.1
5,540,683 - AO353_25115 0.58 +1.1
5,540,683 - AO353_25115 0.58 -0.7
5,540,707 + AO353_25115 0.60 +0.5
5,540,708 - AO353_25115 0.60 -0.4
5,540,739 - AO353_25115 0.62 -1.1
5,540,748 + AO353_25115 0.63 -0.1
5,540,749 - AO353_25115 0.63 -0.7
5,540,749 - AO353_25115 0.63 -0.3
5,540,749 - AO353_25115 0.63 +1.1
5,540,749 - AO353_25115 0.63 -0.2
5,540,881 - AO353_25115 0.73 -1.3
5,540,920 - AO353_25115 0.77 +1.4
5,540,920 - AO353_25115 0.77 -0.7
5,540,959 + AO353_25115 0.80 +0.1
5,540,967 + AO353_25115 0.80 -0.7
5,540,967 + AO353_25115 0.80 +0.2
5,540,968 - AO353_25115 0.80 +1.3
5,540,968 - AO353_25115 0.80 +1.1
5,540,968 - AO353_25115 0.80 +0.2
5,540,968 - AO353_25115 0.80 +0.8
5,540,968 - AO353_25115 0.80 -0.7
5,540,968 - AO353_25115 0.80 -0.3
5,541,024 + AO353_25115 0.85 +0.5
5,541,024 + AO353_25115 0.85 -1.6
5,541,024 + AO353_25115 0.85 +1.1
5,541,024 + AO353_25115 0.85 +0.6
5,541,025 - AO353_25115 0.85 +1.3
5,541,025 - AO353_25115 0.85 +1.1
5,541,025 - AO353_25115 0.85 -0.5
5,541,027 + AO353_25115 0.85 +0.1
5,541,027 + AO353_25115 0.85 -1.5
5,541,027 + AO353_25115 0.85 +0.8
5,541,093 + -1.3
5,541,251 + -1.7
5,541,254 + +0.1
5,541,255 - -0.0
5,541,301 + -0.2
5,541,302 - +0.3
5,541,448 + AO353_25120 0.22 -0.9
5,541,448 + AO353_25120 0.22 +0.6
5,541,448 + AO353_25120 0.22 +1.8
5,541,448 + AO353_25120 0.22 -0.0
5,541,462 + AO353_25120 0.23 +1.9
5,541,463 - AO353_25120 0.23 +0.1
5,541,463 - AO353_25120 0.23 +0.2
5,541,463 - AO353_25120 0.23 +0.4
5,541,463 - AO353_25120 0.23 -1.0
5,541,463 - AO353_25120 0.23 +0.5
5,541,601 + AO353_25120 0.37 -0.2
5,541,602 - AO353_25120 0.38 +1.1
5,541,665 + AO353_25120 0.44 +0.2
5,541,665 + AO353_25120 0.44 +0.8
5,541,665 + AO353_25120 0.44 -0.1
5,541,829 + AO353_25120 0.61 +2.1
5,541,829 + AO353_25120 0.61 +0.6
5,541,830 - AO353_25120 0.61 +1.5
5,541,830 - AO353_25120 0.61 +0.8
5,541,847 + AO353_25120 0.63 -1.2
5,541,886 - AO353_25120 0.67 +1.4
5,542,020 + AO353_25120 0.81 +0.2
5,542,020 + AO353_25120 0.81 +1.3
5,542,020 + AO353_25120 0.81 -0.2
5,542,020 + AO353_25120 0.81 -1.2
5,542,020 + AO353_25120 0.81 -1.2
5,542,020 + AO353_25120 0.81 -0.2
5,542,020 + AO353_25120 0.81 -1.1
5,542,020 + AO353_25120 0.81 -1.5
5,542,020 + AO353_25120 0.81 -0.9
5,542,020 + AO353_25120 0.81 -0.4
5,542,020 + AO353_25120 0.81 -0.8
5,542,021 - AO353_25120 0.81 +0.8
5,542,021 - AO353_25120 0.81 -1.2
5,542,021 - AO353_25120 0.81 -1.2
5,542,021 - +2.1
5,542,021 - AO353_25120 0.81 -1.7
5,542,021 - AO353_25120 0.81 +0.6
5,542,021 - AO353_25120 0.81 -2.7
5,542,021 - AO353_25120 0.81 -0.7
5,542,021 - AO353_25120 0.81 +1.6
5,542,021 - +2.7
5,542,021 - AO353_25120 0.81 -0.1
5,542,021 - AO353_25120 0.81 -0.5
5,542,021 - AO353_25120 0.81 -1.1
5,542,055 + AO353_25120 0.85 +0.1
5,542,055 + AO353_25120 0.85 +0.6
5,542,055 + AO353_25120 0.85 -0.3
5,542,055 + AO353_25120 0.85 -0.5
5,542,056 - AO353_25120 0.85 +0.5
5,542,056 - AO353_25120 0.85 +0.5
5,542,056 - AO353_25120 0.85 -0.5
5,542,056 - AO353_25120 0.85 -1.1
5,542,056 - AO353_25120 0.85 -0.6
5,542,056 - AO353_25120 0.85 -0.0
5,542,056 - AO353_25120 0.85 -1.7
5,542,056 - AO353_25120 0.85 -2.7
5,542,056 - AO353_25120 0.85 -0.0
5,542,056 - AO353_25120 0.85 +2.2
5,542,056 - AO353_25120 0.85 +0.3
5,542,056 - AO353_25120 0.85 +0.5
5,542,066 - AO353_25120 0.86 +1.1
5,542,161 + -1.1
5,542,161 + +0.5
5,542,161 + +2.1
5,542,161 + +0.8
5,542,162 - -1.7
5,542,162 - +0.5
5,542,162 - +0.7
5,542,168 - +1.3
5,542,271 + +0.4
5,542,271 + +2.3
5,542,271 + +0.1
5,542,271 + +0.1
5,542,272 - +1.8
5,542,272 - +0.3
5,542,272 - +1.7
5,542,289 + AO353_25125 0.11 +0.1
5,542,289 + AO353_25125 0.11 -1.3
5,542,290 - AO353_25125 0.11 -0.0
5,542,290 - AO353_25125 0.11 +1.3
5,542,290 - +1.1
5,542,343 + AO353_25125 0.17 +0.6
5,542,343 + AO353_25125 0.17 +0.1
5,542,344 - AO353_25125 0.17 -1.7
5,542,344 - AO353_25125 0.17 -0.8
5,542,373 + AO353_25125 0.21 -0.8
5,542,374 - AO353_25125 0.21 +0.4
5,542,521 + AO353_25125 0.38 -0.2
5,542,566 + AO353_25125 0.44 +0.1
5,542,567 - AO353_25125 0.44 -0.9
5,542,607 + AO353_25125 0.48 -0.3
5,542,607 + AO353_25125 0.48 +0.1
5,542,607 + AO353_25125 0.48 -0.3
5,542,608 - AO353_25125 0.49 +0.3
5,542,608 - AO353_25125 0.49 +0.3
5,542,637 + AO353_25125 0.52 -0.7
5,542,637 + AO353_25125 0.52 +0.9
5,542,637 + AO353_25125 0.52 -0.6
5,542,637 + AO353_25125 0.52 +1.4
5,542,637 + AO353_25125 0.52 -0.1
5,542,803 + AO353_25125 0.72 +0.6
5,542,804 - AO353_25125 0.72 +0.3
5,542,813 + AO353_25125 0.73 -0.5
5,543,053 + +0.5
5,543,053 + -0.5
5,543,053 + -0.5
5,543,053 + -0.3
5,543,054 - +0.1
5,543,086 - -1.3
5,543,086 - +0.2
5,543,086 - -0.7

Or see this region's nucleotide sequence