Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03225 and AO353_03230 are separated by 66 nucleotides AO353_03230 and AO353_03235 are separated by 229 nucleotides AO353_03235 and AO353_03240 are separated by 92 nucleotides
AO353_03225: AO353_03225 - transcriptional regulator, at 686,176 to 686,664
_03225
AO353_03230: AO353_03230 - lysine transporter LysE, at 686,731 to 687,393
_03230
AO353_03235: AO353_03235 - glutamate-pyruvate aminotransferase, at 687,623 to 688,828
_03235
AO353_03240: AO353_03240 - hypothetical protein, at 688,921 to 690,624
_03240
Position (kb) 687
688
689 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 686.704 kb on + strand at 686.705 kb on - strand at 686.705 kb on - strand at 686.705 kb on - strand at 686.705 kb on - strand at 686.705 kb on - strand at 686.705 kb on - strand at 686.705 kb on - strand at 686.705 kb on - strand at 686.706 kb on + strand at 686.706 kb on + strand at 686.706 kb on + strand at 686.706 kb on + strand at 686.706 kb on + strand at 686.706 kb on + strand at 686.706 kb on + strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.799 kb on - strand, within AO353_03230 at 686.799 kb on - strand, within AO353_03230 at 686.810 kb on + strand at 686.837 kb on + strand, within AO353_03230 at 686.838 kb on - strand, within AO353_03230 at 686.838 kb on - strand, within AO353_03230 at 687.025 kb on - strand, within AO353_03230 at 687.106 kb on + strand, within AO353_03230 at 687.152 kb on + strand, within AO353_03230 at 687.152 kb on + strand, within AO353_03230 at 687.153 kb on - strand, within AO353_03230 at 687.153 kb on - strand, within AO353_03230 at 687.203 kb on + strand, within AO353_03230 at 687.245 kb on + strand, within AO353_03230 at 687.245 kb on + strand, within AO353_03230 at 687.246 kb on - strand, within AO353_03230 at 687.248 kb on - strand, within AO353_03230 at 687.248 kb on - strand, within AO353_03230 at 687.408 kb on - strand at 687.408 kb on - strand at 687.408 kb on - strand at 687.416 kb on + strand at 687.416 kb on + strand at 687.416 kb on + strand at 687.416 kb on + strand at 687.416 kb on + strand at 687.416 kb on + strand at 687.417 kb on - strand at 687.417 kb on - strand at 687.417 kb on - strand at 687.417 kb on - strand at 687.424 kb on + strand at 687.425 kb on - strand at 687.497 kb on - strand at 687.506 kb on + strand at 687.506 kb on + strand at 687.547 kb on + strand at 687.604 kb on + strand at 687.604 kb on + strand at 687.604 kb on + strand at 687.604 kb on + strand at 687.605 kb on - strand at 687.605 kb on - strand at 687.605 kb on - strand at 687.605 kb on - strand at 687.610 kb on - strand at 687.660 kb on + strand at 687.660 kb on + strand at 687.660 kb on + strand at 687.660 kb on + strand at 687.660 kb on + strand at 687.660 kb on + strand at 687.661 kb on - strand at 687.661 kb on - strand at 687.661 kb on - strand at 687.677 kb on + strand at 687.677 kb on + strand at 687.677 kb on + strand at 687.678 kb on - strand at 687.678 kb on - strand at 687.678 kb on - strand at 687.681 kb on + strand at 687.681 kb on + strand at 687.681 kb on + strand at 687.681 kb on + strand at 687.681 kb on + strand at 687.681 kb on + strand at 687.681 kb on + strand at 687.681 kb on + strand at 687.681 kb on + strand at 687.682 kb on - strand at 687.682 kb on - strand at 687.682 kb on - strand at 687.682 kb on - strand at 687.682 kb on - strand at 687.682 kb on - strand at 687.682 kb on - strand at 687.682 kb on - strand at 687.688 kb on + strand at 687.688 kb on + strand at 687.847 kb on + strand, within AO353_03235 at 687.848 kb on - strand, within AO353_03235 at 687.848 kb on - strand, within AO353_03235 at 687.881 kb on + strand, within AO353_03235 at 687.894 kb on - strand, within AO353_03235 at 688.031 kb on + strand, within AO353_03235 at 688.031 kb on + strand, within AO353_03235 at 688.031 kb on + strand, within AO353_03235 at 688.032 kb on - strand, within AO353_03235 at 688.032 kb on - strand, within AO353_03235 at 688.230 kb on - strand, within AO353_03235 at 688.230 kb on - strand, within AO353_03235 at 688.230 kb on - strand, within AO353_03235 at 688.260 kb on - strand, within AO353_03235 at 688.274 kb on + strand, within AO353_03235 at 688.274 kb on + strand, within AO353_03235 at 688.275 kb on - strand, within AO353_03235 at 688.275 kb on - strand, within AO353_03235 at 688.275 kb on - strand, within AO353_03235 at 688.358 kb on + strand, within AO353_03235 at 688.358 kb on + strand, within AO353_03235 at 688.358 kb on + strand, within AO353_03235 at 688.358 kb on + strand, within AO353_03235 at 688.359 kb on - strand, within AO353_03235 at 688.359 kb on - strand, within AO353_03235 at 688.359 kb on - strand, within AO353_03235 at 688.359 kb on - strand, within AO353_03235 at 688.359 kb on - strand, within AO353_03235 at 688.359 kb on - strand, within AO353_03235 at 688.359 kb on - strand, within AO353_03235 at 688.436 kb on + strand, within AO353_03235 at 688.436 kb on + strand, within AO353_03235 at 688.437 kb on - strand, within AO353_03235 at 688.437 kb on - strand, within AO353_03235 at 688.445 kb on + strand, within AO353_03235 at 688.446 kb on - strand, within AO353_03235 at 688.446 kb on - strand, within AO353_03235 at 688.544 kb on - strand, within AO353_03235 at 688.607 kb on + strand, within AO353_03235 at 688.607 kb on + strand, within AO353_03235 at 688.607 kb on + strand, within AO353_03235 at 688.607 kb on + strand, within AO353_03235 at 688.607 kb on + strand, within AO353_03235 at 688.607 kb on + strand, within AO353_03235 at 688.607 kb on + strand, within AO353_03235 at 688.608 kb on - strand, within AO353_03235 at 688.608 kb on - strand, within AO353_03235 at 688.634 kb on + strand, within AO353_03235 at 688.635 kb on - strand, within AO353_03235 at 688.635 kb on - strand, within AO353_03235 at 688.722 kb on - strand at 688.722 kb on - strand at 688.839 kb on + strand at 688.840 kb on - strand at 688.848 kb on - strand at 688.848 kb on - strand at 688.848 kb on - strand at 688.871 kb on + strand at 688.871 kb on + strand at 688.871 kb on + strand at 688.871 kb on + strand at 688.871 kb on + strand at 688.871 kb on + strand at 688.871 kb on + strand at 688.871 kb on + strand at 688.871 kb on + strand at 688.872 kb on - strand at 688.872 kb on - strand at 688.872 kb on - strand at 688.872 kb on - strand at 688.872 kb on - strand at 688.872 kb on - strand at 688.872 kb on - strand at 688.872 kb on - strand at 688.872 kb on - strand at 688.872 kb on - strand at 688.872 kb on - strand at 688.872 kb on - strand at 688.872 kb on - strand at 688.872 kb on - strand at 688.873 kb on + strand at 688.873 kb on + strand at 688.873 kb on + strand at 688.874 kb on - strand at 688.874 kb on - strand at 688.874 kb on - strand at 688.874 kb on - strand at 688.874 kb on - strand at 688.874 kb on - strand at 688.874 kb on - strand at 688.874 kb on - strand at 688.874 kb on - strand at 688.898 kb on + strand at 688.930 kb on + strand at 688.930 kb on + strand at 688.935 kb on + strand at 688.936 kb on - strand at 688.936 kb on - strand at 688.936 kb on - strand at 688.936 kb on - strand at 688.949 kb on + strand at 688.949 kb on + strand at 688.949 kb on + strand at 688.949 kb on + strand at 688.949 kb on + strand at 688.949 kb on + strand at 688.950 kb on - strand at 688.950 kb on - strand at 688.950 kb on - strand at 688.950 kb on - strand at 688.952 kb on + strand at 688.952 kb on + strand at 688.952 kb on + strand at 688.953 kb on - strand at 688.953 kb on - strand at 689.076 kb on + strand at 689.077 kb on - strand at 689.084 kb on + strand at 689.084 kb on + strand at 689.084 kb on + strand at 689.084 kb on + strand at 689.085 kb on - strand at 689.085 kb on - strand at 689.151 kb on - strand, within AO353_03240 at 689.183 kb on + strand, within AO353_03240 at 689.183 kb on + strand, within AO353_03240 at 689.184 kb on - strand, within AO353_03240 at 689.184 kb on - strand, within AO353_03240 at 689.184 kb on - strand, within AO353_03240 at 689.191 kb on - strand, within AO353_03240 at 689.228 kb on + strand, within AO353_03240 at 689.229 kb on - strand, within AO353_03240 at 689.229 kb on - strand, within AO353_03240 at 689.229 kb on - strand, within AO353_03240 at 689.289 kb on + strand, within AO353_03240 at 689.289 kb on + strand, within AO353_03240 at 689.321 kb on + strand, within AO353_03240 at 689.321 kb on + strand, within AO353_03240 at 689.321 kb on + strand, within AO353_03240 at 689.321 kb on + strand, within AO353_03240 at 689.321 kb on + strand, within AO353_03240 at 689.321 kb on + strand, within AO353_03240 at 689.321 kb on + strand, within AO353_03240 at 689.322 kb on - strand, within AO353_03240 at 689.322 kb on - strand, within AO353_03240 at 689.322 kb on - strand, within AO353_03240 at 689.322 kb on - strand, within AO353_03240 at 689.322 kb on - strand, within AO353_03240 at 689.322 kb on - strand, within AO353_03240 at 689.322 kb on - strand, within AO353_03240 at 689.322 kb on - strand, within AO353_03240 at 689.378 kb on + strand, within AO353_03240 at 689.379 kb on - strand, within AO353_03240 at 689.388 kb on - strand, within AO353_03240 at 689.432 kb on + strand at 689.432 kb on + strand, within AO353_03240 at 689.432 kb on + strand, within AO353_03240 at 689.432 kb on + strand, within AO353_03240 at 689.433 kb on - strand, within AO353_03240 at 689.433 kb on - strand, within AO353_03240 at 689.464 kb on - strand, within AO353_03240 at 689.466 kb on + strand, within AO353_03240 at 689.466 kb on + strand, within AO353_03240 at 689.466 kb on + strand, within AO353_03240 at 689.467 kb on - strand, within AO353_03240 at 689.467 kb on - strand, within AO353_03240 at 689.467 kb on - strand, within AO353_03240 at 689.511 kb on + strand, within AO353_03240 at 689.511 kb on + strand, within AO353_03240 at 689.540 kb on + strand, within AO353_03240 at 689.540 kb on + strand, within AO353_03240 at 689.540 kb on + strand, within AO353_03240 at 689.540 kb on + strand, within AO353_03240 at 689.541 kb on - strand, within AO353_03240 at 689.541 kb on - strand, within AO353_03240 at 689.541 kb on - strand, within AO353_03240 at 689.589 kb on + strand, within AO353_03240 at 689.641 kb on + strand, within AO353_03240 at 689.642 kb on - strand, within AO353_03240 at 689.642 kb on - strand, within AO353_03240 at 689.676 kb on + strand, within AO353_03240 at 689.677 kb on - strand, within AO353_03240 at 689.677 kb on - strand, within AO353_03240 at 689.688 kb on + strand, within AO353_03240 at 689.688 kb on + strand, within AO353_03240 at 689.689 kb on - strand, within AO353_03240 at 689.702 kb on + strand, within AO353_03240 at 689.702 kb on + strand, within AO353_03240 at 689.730 kb on + strand, within AO353_03240 at 689.730 kb on + strand, within AO353_03240 at 689.730 kb on + strand, within AO353_03240 at 689.731 kb on - strand, within AO353_03240 at 689.731 kb on - strand, within AO353_03240 at 689.731 kb on - strand, within AO353_03240 at 689.731 kb on - strand, within AO353_03240 at 689.731 kb on - strand, within AO353_03240 at 689.731 kb on - strand, within AO353_03240 at 689.731 kb on - strand, within AO353_03240 at 689.771 kb on - strand, within AO353_03240 at 689.824 kb on - strand, within AO353_03240
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 686,704 + +0.9 686,705 - -0.4 686,705 - -0.2 686,705 - +0.4 686,705 - +0.3 686,705 - -1.0 686,705 - -0.2 686,705 - -0.3 686,705 - +1.6 686,706 + -0.4 686,706 + -0.4 686,706 + +1.6 686,706 + +2.2 686,706 + +0.0 686,706 + +0.2 686,706 + -0.2 686,707 - -1.9 686,707 - +0.4 686,707 - +1.0 686,707 - +0.9 686,707 - -1.3 686,707 - -0.7 686,707 - +0.8 686,707 - +0.7 686,707 - +0.1 686,707 - -0.6 686,707 - +0.4 686,707 - -0.1 686,799 - AO353_03230 0.10 +0.0 686,799 - AO353_03230 0.10 +0.6 686,810 + +1.6 686,837 + AO353_03230 0.16 -1.2 686,838 - AO353_03230 0.16 -0.3 686,838 - AO353_03230 0.16 +0.2 687,025 - AO353_03230 0.44 -0.9 687,106 + AO353_03230 0.57 +0.6 687,152 + AO353_03230 0.63 +3.2 687,152 + AO353_03230 0.63 -0.5 687,153 - AO353_03230 0.64 +1.6 687,153 - AO353_03230 0.64 -0.6 687,203 + AO353_03230 0.71 +0.0 687,245 + AO353_03230 0.78 +0.2 687,245 + AO353_03230 0.78 -1.9 687,246 - AO353_03230 0.78 +1.6 687,248 - AO353_03230 0.78 -0.9 687,248 - AO353_03230 0.78 -1.3 687,408 - -1.7 687,408 - -1.6 687,408 - +1.4 687,416 + +1.9 687,416 + +1.0 687,416 + -0.2 687,416 + -0.4 687,416 + +0.6 687,416 + +1.0 687,417 - +1.9 687,417 - -1.4 687,417 - +1.8 687,417 - +0.0 687,424 + +0.5 687,425 - +1.2 687,497 - -0.6 687,506 + +0.6 687,506 + -0.3 687,547 + +2.0 687,604 + +0.6 687,604 + -1.1 687,604 + +0.6 687,604 + +0.1 687,605 - -0.3 687,605 - -1.0 687,605 - -0.4 687,605 - -0.7 687,610 - -1.2 687,660 + -1.0 687,660 + +1.2 687,660 + -0.4 687,660 + -0.1 687,660 + -1.5 687,660 + -0.7 687,661 - -0.4 687,661 - -1.6 687,661 - -1.6 687,677 + -0.1 687,677 + -0.7 687,677 + -0.8 687,678 - -2.6 687,678 - -2.0 687,678 - -2.3 687,681 + -1.2 687,681 + +0.6 687,681 + -2.0 687,681 + -1.1 687,681 + -1.2 687,681 + -1.9 687,681 + -1.9 687,681 + +0.4 687,681 + -1.3 687,682 - -1.5 687,682 - -1.5 687,682 - -0.4 687,682 - -0.7 687,682 - -1.0 687,682 - -1.3 687,682 - +0.2 687,682 - -1.4 687,688 + -1.1 687,688 + -1.7 687,847 + AO353_03235 0.19 +0.2 687,848 - AO353_03235 0.19 -1.7 687,848 - AO353_03235 0.19 -2.8 687,881 + AO353_03235 0.21 -1.3 687,894 - AO353_03235 0.22 -2.6 688,031 + AO353_03235 0.34 -1.9 688,031 + AO353_03235 0.34 -2.5 688,031 + AO353_03235 0.34 -0.5 688,032 - AO353_03235 0.34 -1.3 688,032 - AO353_03235 0.34 -1.7 688,230 - AO353_03235 0.50 -1.9 688,230 - AO353_03235 0.50 -2.8 688,230 - AO353_03235 0.50 -0.7 688,260 - AO353_03235 0.53 -1.4 688,274 + AO353_03235 0.54 +0.6 688,274 + AO353_03235 0.54 -0.8 688,275 - AO353_03235 0.54 -1.7 688,275 - AO353_03235 0.54 -3.2 688,275 - AO353_03235 0.54 -0.2 688,358 + AO353_03235 0.61 +0.1 688,358 + AO353_03235 0.61 -0.2 688,358 + AO353_03235 0.61 -2.0 688,358 + AO353_03235 0.61 -0.6 688,359 - AO353_03235 0.61 -2.7 688,359 - AO353_03235 0.61 -3.6 688,359 - AO353_03235 0.61 -0.1 688,359 - AO353_03235 0.61 -2.0 688,359 - AO353_03235 0.61 -2.0 688,359 - AO353_03235 0.61 -0.5 688,359 - AO353_03235 0.61 -0.5 688,436 + AO353_03235 0.67 -1.0 688,436 + AO353_03235 0.67 -2.1 688,437 - AO353_03235 0.67 +0.1 688,437 - AO353_03235 0.67 -0.4 688,445 + AO353_03235 0.68 -0.1 688,446 - AO353_03235 0.68 +1.0 688,446 - AO353_03235 0.68 -0.8 688,544 - AO353_03235 0.76 -0.5 688,607 + AO353_03235 0.82 -1.2 688,607 + AO353_03235 0.82 -3.0 688,607 + AO353_03235 0.82 -0.7 688,607 + AO353_03235 0.82 -2.1 688,607 + AO353_03235 0.82 -0.8 688,607 + AO353_03235 0.82 -0.2 688,607 + AO353_03235 0.82 -0.9 688,608 - AO353_03235 0.82 -1.1 688,608 - AO353_03235 0.82 -1.9 688,634 + AO353_03235 0.84 -2.3 688,635 - AO353_03235 0.84 -0.7 688,635 - AO353_03235 0.84 -0.5 688,722 - +0.2 688,722 - -2.6 688,839 + -0.4 688,840 - +0.2 688,848 - +0.9 688,848 - -1.2 688,848 - +1.0 688,871 + +0.0 688,871 + +0.5 688,871 + +0.0 688,871 + +0.0 688,871 + +1.2 688,871 + -0.7 688,871 + -0.7 688,871 + +3.6 688,871 + +0.0 688,872 - +0.4 688,872 - -0.6 688,872 - -1.0 688,872 - +0.3 688,872 - +0.9 688,872 - +1.0 688,872 - -0.4 688,872 - +0.2 688,872 - +0.0 688,872 - -0.7 688,872 - +1.0 688,872 - -0.6 688,872 - -0.7 688,872 - +0.3 688,873 + -0.8 688,873 + +0.6 688,873 + +0.9 688,874 - -0.6 688,874 - +0.9 688,874 - -1.6 688,874 - +1.1 688,874 - -0.1 688,874 - -0.3 688,874 - -0.2 688,874 - -1.0 688,874 - +1.2 688,898 + -0.1 688,930 + -0.2 688,930 + -0.5 688,935 + +0.1 688,936 - +0.6 688,936 - -0.6 688,936 - +0.4 688,936 - +0.9 688,949 + -1.3 688,949 + +0.3 688,949 + +1.0 688,949 + -1.9 688,949 + +1.3 688,949 + -0.5 688,950 - +0.6 688,950 - -1.1 688,950 - -0.6 688,950 - -2.1 688,952 + +0.0 688,952 + -0.3 688,952 + +0.2 688,953 - -0.3 688,953 - -1.1 689,076 + +1.1 689,077 - -1.4 689,084 + +0.9 689,084 + -0.9 689,084 + -0.1 689,084 + -0.2 689,085 - -0.4 689,085 - -0.3 689,151 - AO353_03240 0.13 +0.9 689,183 + AO353_03240 0.15 +0.2 689,183 + AO353_03240 0.15 +0.4 689,184 - AO353_03240 0.15 +1.0 689,184 - AO353_03240 0.15 +1.3 689,184 - AO353_03240 0.15 +0.0 689,191 - AO353_03240 0.16 +1.0 689,228 + AO353_03240 0.18 -0.5 689,229 - AO353_03240 0.18 +0.2 689,229 - AO353_03240 0.18 +1.1 689,229 - AO353_03240 0.18 +0.1 689,289 + AO353_03240 0.22 -0.4 689,289 + AO353_03240 0.22 +1.6 689,321 + AO353_03240 0.23 -0.6 689,321 + AO353_03240 0.23 -0.8 689,321 + AO353_03240 0.23 +0.8 689,321 + AO353_03240 0.23 -0.1 689,321 + AO353_03240 0.23 +2.6 689,321 + AO353_03240 0.23 +0.9 689,321 + AO353_03240 0.23 +1.0 689,322 - AO353_03240 0.24 +1.1 689,322 - AO353_03240 0.24 -0.4 689,322 - AO353_03240 0.24 +0.4 689,322 - AO353_03240 0.24 +0.3 689,322 - AO353_03240 0.24 -0.5 689,322 - AO353_03240 0.24 +0.0 689,322 - AO353_03240 0.24 +0.2 689,322 - AO353_03240 0.24 -0.2 689,378 + AO353_03240 0.27 -0.7 689,379 - AO353_03240 0.27 +0.4 689,388 - AO353_03240 0.27 +0.4 689,432 + +1.6 689,432 + AO353_03240 0.30 +0.3 689,432 + AO353_03240 0.30 -1.7 689,432 + AO353_03240 0.30 -0.4 689,433 - AO353_03240 0.30 +0.9 689,433 - AO353_03240 0.30 -1.7 689,464 - AO353_03240 0.32 -0.2 689,466 + AO353_03240 0.32 +1.1 689,466 + AO353_03240 0.32 +1.9 689,466 + AO353_03240 0.32 +0.0 689,467 - AO353_03240 0.32 +0.1 689,467 - AO353_03240 0.32 -0.4 689,467 - AO353_03240 0.32 +0.3 689,511 + AO353_03240 0.35 +0.3 689,511 + AO353_03240 0.35 +0.2 689,540 + AO353_03240 0.36 +0.6 689,540 + AO353_03240 0.36 -1.3 689,540 + AO353_03240 0.36 -0.9 689,540 + AO353_03240 0.36 +1.3 689,541 - AO353_03240 0.36 +0.0 689,541 - AO353_03240 0.36 -1.6 689,541 - AO353_03240 0.36 +0.7 689,589 + AO353_03240 0.39 +0.4 689,641 + AO353_03240 0.42 +0.2 689,642 - AO353_03240 0.42 +0.8 689,642 - AO353_03240 0.42 +0.0 689,676 + AO353_03240 0.44 -0.3 689,677 - AO353_03240 0.44 -0.5 689,677 - AO353_03240 0.44 +0.9 689,688 + AO353_03240 0.45 -0.4 689,688 + AO353_03240 0.45 +0.4 689,689 - AO353_03240 0.45 +0.8 689,702 + AO353_03240 0.46 -0.7 689,702 + AO353_03240 0.46 +0.9 689,730 + AO353_03240 0.47 +0.3 689,730 + AO353_03240 0.47 -0.8 689,730 + AO353_03240 0.47 -0.0 689,731 - AO353_03240 0.48 -0.2 689,731 - AO353_03240 0.48 +0.2 689,731 - AO353_03240 0.48 +1.3 689,731 - AO353_03240 0.48 -0.1 689,731 - AO353_03240 0.48 -0.4 689,731 - AO353_03240 0.48 +1.8 689,731 - AO353_03240 0.48 +1.6 689,771 - AO353_03240 0.50 -0.1 689,824 - AO353_03240 0.53 +0.9
Or see this region's nucleotide sequence