Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02490 and AO353_02495 are separated by 140 nucleotides AO353_02495 and AO353_02500 are separated by 19 nucleotides AO353_02500 and AO353_02505 are separated by 186 nucleotides AO353_02505 and AO353_02510 are separated by 19 nucleotides AO353_02510 and AO353_02515 are separated by 160 nucleotides AO353_02515 and AO353_02520 are separated by 145 nucleotides
AO353_02490: AO353_02490 - catalase, at 533,622 to 534,758
_02490
AO353_02495: AO353_02495 - tRNA-Asp, at 534,899 to 534,975
_02495
AO353_02500: AO353_02500 - tRNA-Val, at 534,995 to 535,070
_02500
AO353_02505: AO353_02505 - tRNA-Asp, at 535,257 to 535,333
_02505
AO353_02510: AO353_02510 - tRNA-Val, at 535,353 to 535,428
_02510
AO353_02515: AO353_02515 - recombination-associated protein RdgC, at 535,589 to 536,509
_02515
AO353_02520: AO353_02520 - sodium transporter, at 536,655 to 537,620
_02520
Position (kb) 535
536
537 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 534.698 kb on - strand at 534.701 kb on + strand at 534.701 kb on + strand at 534.702 kb on - strand at 534.702 kb on - strand at 534.702 kb on - strand at 534.702 kb on - strand at 534.702 kb on - strand at 534.702 kb on - strand at 534.711 kb on + strand at 534.712 kb on - strand at 534.756 kb on + strand at 534.756 kb on + strand at 534.756 kb on + strand at 534.756 kb on + strand at 534.756 kb on + strand at 534.757 kb on - strand at 534.757 kb on - strand at 534.757 kb on - strand at 534.757 kb on - strand at 534.757 kb on - strand at 534.759 kb on + strand at 534.760 kb on - strand at 534.760 kb on - strand at 534.760 kb on - strand at 534.760 kb on - strand at 534.818 kb on + strand at 534.818 kb on + strand at 534.819 kb on - strand at 534.819 kb on - strand at 534.898 kb on - strand at 534.992 kb on - strand at 534.992 kb on - strand at 534.992 kb on - strand at 534.992 kb on - strand at 534.992 kb on - strand at 534.992 kb on - strand at 535.125 kb on - strand at 535.167 kb on + strand at 535.167 kb on + strand at 535.168 kb on - strand at 535.187 kb on + strand at 535.188 kb on - strand at 535.518 kb on + strand at 535.518 kb on + strand at 535.519 kb on - strand at 535.519 kb on - strand at 535.534 kb on + strand at 535.535 kb on - strand at 535.535 kb on - strand at 535.553 kb on + strand at 535.554 kb on - strand at 535.554 kb on - strand at 535.568 kb on + strand at 535.568 kb on + strand at 535.568 kb on + strand at 535.568 kb on + strand at 535.568 kb on + strand at 535.568 kb on + strand at 535.569 kb on - strand at 535.569 kb on - strand at 535.569 kb on - strand at 535.569 kb on - strand at 535.569 kb on - strand at 535.569 kb on - strand at 535.570 kb on + strand at 535.570 kb on + strand at 535.570 kb on + strand at 535.609 kb on + strand at 535.609 kb on + strand at 535.609 kb on + strand at 535.609 kb on + strand at 535.609 kb on + strand at 535.610 kb on - strand at 535.610 kb on - strand at 535.610 kb on - strand at 535.610 kb on - strand at 535.610 kb on - strand at 535.610 kb on - strand at 535.610 kb on - strand at 535.610 kb on - strand at 535.610 kb on - strand at 535.610 kb on - strand at 535.610 kb on - strand at 535.610 kb on - strand at 535.613 kb on + strand at 535.614 kb on - strand at 535.614 kb on - strand at 535.614 kb on - strand at 535.712 kb on + strand, within AO353_02515 at 535.712 kb on + strand, within AO353_02515 at 535.712 kb on + strand, within AO353_02515 at 535.712 kb on + strand, within AO353_02515 at 535.712 kb on + strand, within AO353_02515 at 535.713 kb on - strand, within AO353_02515 at 535.713 kb on - strand, within AO353_02515 at 535.713 kb on - strand, within AO353_02515 at 535.758 kb on + strand, within AO353_02515 at 535.758 kb on + strand, within AO353_02515 at 535.758 kb on + strand, within AO353_02515 at 535.758 kb on + strand, within AO353_02515 at 535.758 kb on + strand, within AO353_02515 at 535.758 kb on + strand, within AO353_02515 at 535.759 kb on - strand, within AO353_02515 at 535.759 kb on - strand, within AO353_02515 at 535.759 kb on - strand, within AO353_02515 at 535.759 kb on - strand, within AO353_02515 at 535.759 kb on - strand, within AO353_02515 at 535.759 kb on - strand, within AO353_02515 at 535.759 kb on - strand, within AO353_02515 at 535.886 kb on + strand, within AO353_02515 at 535.886 kb on + strand, within AO353_02515 at 535.887 kb on - strand, within AO353_02515 at 535.887 kb on - strand, within AO353_02515 at 535.887 kb on - strand, within AO353_02515 at 535.887 kb on - strand, within AO353_02515 at 535.888 kb on + strand, within AO353_02515 at 535.888 kb on + strand, within AO353_02515 at 535.888 kb on + strand, within AO353_02515 at 535.949 kb on - strand, within AO353_02515 at 536.076 kb on + strand, within AO353_02515 at 536.077 kb on - strand, within AO353_02515 at 536.160 kb on + strand, within AO353_02515 at 536.161 kb on - strand, within AO353_02515 at 536.266 kb on + strand, within AO353_02515 at 536.266 kb on + strand, within AO353_02515 at 536.507 kb on + strand at 536.507 kb on + strand at 536.507 kb on + strand at 536.507 kb on + strand at 536.507 kb on + strand at 536.508 kb on - strand at 536.516 kb on + strand at 536.546 kb on - strand at 536.546 kb on - strand at 536.546 kb on - strand at 536.546 kb on - strand at 536.546 kb on - strand at 536.546 kb on - strand at 536.578 kb on + strand at 536.578 kb on + strand at 536.578 kb on + strand at 536.578 kb on + strand at 536.578 kb on + strand at 536.579 kb on - strand at 536.579 kb on - strand at 536.579 kb on - strand at 536.579 kb on - strand at 536.579 kb on - strand at 536.583 kb on + strand at 536.583 kb on + strand at 536.583 kb on + strand at 536.583 kb on + strand at 536.583 kb on + strand at 536.583 kb on + strand at 536.583 kb on + strand at 536.584 kb on - strand at 536.584 kb on - strand at 536.584 kb on - strand at 536.584 kb on - strand at 536.584 kb on - strand at 536.584 kb on - strand at 536.601 kb on - strand at 536.628 kb on + strand at 536.637 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.725 kb on + strand at 537.351 kb on - strand, within AO353_02520 at 537.351 kb on - strand, within AO353_02520 at 537.351 kb on - strand, within AO353_02520 at 537.375 kb on + strand, within AO353_02520 at 537.375 kb on + strand, within AO353_02520
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 534,698 - +0.5 534,701 + +0.5 534,701 + +0.8 534,702 - +0.2 534,702 - -0.2 534,702 - -0.8 534,702 - +1.4 534,702 - +0.5 534,702 - +0.4 534,711 + +0.3 534,712 - -0.0 534,756 + +0.4 534,756 + -0.9 534,756 + +0.2 534,756 + -1.4 534,756 + -0.8 534,757 - -0.0 534,757 - +1.0 534,757 - -0.3 534,757 - +1.3 534,757 - +1.5 534,759 + -0.3 534,760 - +0.2 534,760 - +0.1 534,760 - -0.0 534,760 - -0.0 534,818 + +0.7 534,818 + +0.5 534,819 - -1.3 534,819 - +0.5 534,898 - +0.2 534,992 - +0.4 534,992 - +0.5 534,992 - +0.9 534,992 - -2.6 534,992 - +0.8 534,992 - +0.5 535,125 - +1.5 535,167 + +0.1 535,167 + -0.1 535,168 - +0.3 535,187 + -0.5 535,188 - +0.5 535,518 + +0.4 535,518 + -0.6 535,519 - +0.8 535,519 - +1.5 535,534 + +1.9 535,535 - -0.2 535,535 - +2.5 535,553 + +1.9 535,554 - +0.4 535,554 - -0.0 535,568 + -0.1 535,568 + -0.8 535,568 + -0.3 535,568 + +0.4 535,568 + +0.1 535,568 + -0.8 535,569 - -1.1 535,569 - -1.7 535,569 - -1.2 535,569 - +1.1 535,569 - -0.0 535,569 - +0.0 535,570 + -0.8 535,570 + +0.4 535,570 + -1.5 535,609 + -1.8 535,609 + -0.3 535,609 + -1.4 535,609 + -1.9 535,609 + -1.5 535,610 - -0.6 535,610 - -2.0 535,610 - +0.1 535,610 - -0.0 535,610 - -2.5 535,610 - -0.5 535,610 - -2.5 535,610 - -0.0 535,610 - -1.4 535,610 - +2.0 535,610 - -0.6 535,610 - -1.5 535,613 + +1.5 535,614 - -0.8 535,614 - -1.4 535,614 - +0.2 535,712 + AO353_02515 0.13 -0.5 535,712 + AO353_02515 0.13 +1.0 535,712 + AO353_02515 0.13 -3.0 535,712 + AO353_02515 0.13 -1.3 535,712 + AO353_02515 0.13 -0.5 535,713 - AO353_02515 0.13 -3.0 535,713 - AO353_02515 0.13 -0.8 535,713 - AO353_02515 0.13 -0.7 535,758 + AO353_02515 0.18 -0.6 535,758 + AO353_02515 0.18 -1.9 535,758 + AO353_02515 0.18 +0.8 535,758 + AO353_02515 0.18 -0.3 535,758 + AO353_02515 0.18 -1.9 535,758 + AO353_02515 0.18 -1.6 535,759 - AO353_02515 0.18 -0.5 535,759 - AO353_02515 0.18 -2.5 535,759 - AO353_02515 0.18 -1.0 535,759 - AO353_02515 0.18 -0.5 535,759 - AO353_02515 0.18 -1.5 535,759 - AO353_02515 0.18 -1.0 535,759 - AO353_02515 0.18 -1.0 535,886 + AO353_02515 0.32 -0.6 535,886 + AO353_02515 0.32 +0.1 535,887 - AO353_02515 0.32 -1.8 535,887 - AO353_02515 0.32 -1.4 535,887 - AO353_02515 0.32 -1.0 535,887 - AO353_02515 0.32 -1.8 535,888 + AO353_02515 0.32 -2.7 535,888 + AO353_02515 0.32 +0.2 535,888 + AO353_02515 0.32 -0.0 535,949 - AO353_02515 0.39 +1.1 536,076 + AO353_02515 0.53 -0.4 536,077 - AO353_02515 0.53 -0.6 536,160 + AO353_02515 0.62 +0.8 536,161 - AO353_02515 0.62 +0.5 536,266 + AO353_02515 0.74 +1.0 536,266 + AO353_02515 0.74 +0.9 536,507 + +0.7 536,507 + -2.3 536,507 + +0.1 536,507 + +0.2 536,507 + +0.3 536,508 - +0.3 536,516 + +0.3 536,546 - -2.0 536,546 - -0.8 536,546 - -0.5 536,546 - -0.0 536,546 - -0.5 536,546 - +0.3 536,578 + +0.5 536,578 + +1.2 536,578 + +0.8 536,578 + -0.0 536,578 + +1.2 536,579 - +0.5 536,579 - +0.9 536,579 - +0.3 536,579 - +0.2 536,579 - +0.8 536,583 + -1.5 536,583 + -0.3 536,583 + -0.2 536,583 + +0.2 536,583 + +0.4 536,583 + -0.8 536,583 + +0.8 536,584 - +1.3 536,584 - -0.3 536,584 - +0.5 536,584 - -0.8 536,584 - +1.0 536,584 - -0.6 536,601 - +0.6 536,628 + +0.5 536,637 + -0.3 536,639 + -0.6 536,639 + -0.8 536,639 + -0.2 536,639 + +0.4 536,639 + +0.5 536,639 + -0.3 536,639 + +0.8 536,639 + -1.4 536,639 + +0.6 536,639 + -0.8 536,639 + +0.3 536,640 - -0.0 536,640 - +1.9 536,640 - -0.5 536,640 - -2.5 536,640 - -1.3 536,640 - -0.6 536,640 - -0.0 536,640 - -1.1 536,640 - +0.1 536,640 - -0.3 536,640 - -0.8 536,640 - +0.2 536,640 - +0.4 536,640 - +0.1 536,640 - -0.3 536,640 - -1.5 536,640 - -0.3 536,640 - -0.3 536,640 - -0.2 536,640 - +0.1 536,640 - -1.8 536,640 - -2.4 536,725 + +0.4 537,351 - AO353_02520 0.72 +0.4 537,351 - AO353_02520 0.72 +0.2 537,351 - AO353_02520 0.72 +0.5 537,375 + AO353_02520 0.75 +0.7 537,375 + AO353_02520 0.75 -0.2
Or see this region's nucleotide sequence