Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004257

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004255 and ABIE53_004256 are separated by 121 nucleotidesABIE53_004256 and ABIE53_004257 are separated by 31 nucleotidesABIE53_004257 and ABIE53_004258 are separated by 258 nucleotides ABIE53_004255: ABIE53_004255 - hypothetical protein, at 428,927 to 429,382 _004255 ABIE53_004256: ABIE53_004256 - threonine/homoserine/homoserine lactone efflux protein, at 429,504 to 430,130 _004256 ABIE53_004257: ABIE53_004257 - DNA-binding transcriptional MocR family regulator, at 430,162 to 431,577 _004257 ABIE53_004258: ABIE53_004258 - beta-alanine--pyruvate transaminase, at 431,836 to 433,164 _004258 Position (kb) 430 431 432Strain fitness (log2 ratio) -2 -1 0 1 2at 429.352 kb on + strandat 429.352 kb on + strandat 429.352 kb on + strandat 429.353 kb on - strandat 429.353 kb on - strandat 429.353 kb on - strandat 429.353 kb on - strandat 429.388 kb on - strandat 429.388 kb on - strandat 429.388 kb on - strandat 429.388 kb on - strandat 429.463 kb on + strandat 429.463 kb on + strandat 429.464 kb on - strandat 429.482 kb on + strandat 429.483 kb on - strandat 429.510 kb on + strandat 429.511 kb on - strandat 429.511 kb on - strandat 429.511 kb on - strandat 429.668 kb on - strand, within ABIE53_004256at 429.668 kb on - strand, within ABIE53_004256at 429.668 kb on - strand, within ABIE53_004256at 429.726 kb on + strand, within ABIE53_004256at 429.726 kb on + strand, within ABIE53_004256at 429.726 kb on + strand, within ABIE53_004256at 429.726 kb on + strand, within ABIE53_004256at 429.727 kb on - strand, within ABIE53_004256at 429.727 kb on - strand, within ABIE53_004256at 429.757 kb on - strand, within ABIE53_004256at 429.763 kb on + strand, within ABIE53_004256at 429.763 kb on + strand, within ABIE53_004256at 429.763 kb on + strand, within ABIE53_004256at 429.763 kb on + strand, within ABIE53_004256at 429.763 kb on + strand, within ABIE53_004256at 429.764 kb on - strand, within ABIE53_004256at 429.764 kb on - strand, within ABIE53_004256at 429.765 kb on + strand, within ABIE53_004256at 429.765 kb on + strand, within ABIE53_004256at 429.766 kb on - strand, within ABIE53_004256at 429.766 kb on - strand, within ABIE53_004256at 429.766 kb on - strand, within ABIE53_004256at 429.766 kb on - strand, within ABIE53_004256at 429.800 kb on + strand, within ABIE53_004256at 429.800 kb on + strand, within ABIE53_004256at 429.800 kb on + strand, within ABIE53_004256at 429.800 kb on + strand, within ABIE53_004256at 429.800 kb on + strand, within ABIE53_004256at 429.800 kb on + strand, within ABIE53_004256at 429.800 kb on + strand, within ABIE53_004256at 429.801 kb on - strand, within ABIE53_004256at 429.801 kb on - strand, within ABIE53_004256at 429.801 kb on - strand, within ABIE53_004256at 429.837 kb on + strand, within ABIE53_004256at 429.837 kb on + strand, within ABIE53_004256at 429.837 kb on + strand, within ABIE53_004256at 429.837 kb on + strand, within ABIE53_004256at 429.837 kb on + strand, within ABIE53_004256at 429.837 kb on + strand, within ABIE53_004256at 429.838 kb on - strand, within ABIE53_004256at 429.838 kb on - strand, within ABIE53_004256at 429.845 kb on + strand, within ABIE53_004256at 429.845 kb on + strand, within ABIE53_004256at 429.846 kb on - strand, within ABIE53_004256at 429.924 kb on + strand, within ABIE53_004256at 429.924 kb on + strand, within ABIE53_004256at 429.924 kb on + strand, within ABIE53_004256at 429.924 kb on + strand, within ABIE53_004256at 429.924 kb on + strand, within ABIE53_004256at 429.924 kb on + strand, within ABIE53_004256at 429.924 kb on + strand, within ABIE53_004256at 429.925 kb on - strand, within ABIE53_004256at 429.960 kb on + strand, within ABIE53_004256at 429.960 kb on + strand, within ABIE53_004256at 429.960 kb on + strand, within ABIE53_004256at 429.960 kb on + strand, within ABIE53_004256at 429.961 kb on - strand, within ABIE53_004256at 429.961 kb on - strand, within ABIE53_004256at 429.961 kb on - strand, within ABIE53_004256at 429.961 kb on - strand, within ABIE53_004256at 429.961 kb on - strand, within ABIE53_004256at 429.961 kb on - strand, within ABIE53_004256at 429.961 kb on - strand, within ABIE53_004256at 430.090 kb on - strandat 430.090 kb on - strandat 430.128 kb on + strandat 430.180 kb on + strandat 430.181 kb on - strandat 430.181 kb on - strandat 430.181 kb on - strandat 430.220 kb on + strandat 430.271 kb on + strandat 430.271 kb on + strandat 430.271 kb on + strandat 430.271 kb on + strandat 430.271 kb on + strandat 430.272 kb on - strandat 430.272 kb on - strandat 430.272 kb on - strandat 430.501 kb on - strand, within ABIE53_004257at 430.595 kb on + strand, within ABIE53_004257at 430.596 kb on - strand, within ABIE53_004257at 430.596 kb on - strand, within ABIE53_004257at 430.643 kb on + strand, within ABIE53_004257at 430.643 kb on + strand, within ABIE53_004257at 430.643 kb on + strand, within ABIE53_004257at 430.643 kb on + strand, within ABIE53_004257at 430.644 kb on - strand, within ABIE53_004257at 430.644 kb on - strand, within ABIE53_004257at 430.644 kb on - strand, within ABIE53_004257at 430.644 kb on - strand, within ABIE53_004257at 431.257 kb on + strand, within ABIE53_004257at 431.258 kb on - strand, within ABIE53_004257at 431.258 kb on - strand, within ABIE53_004257at 431.399 kb on + strand, within ABIE53_004257at 431.399 kb on + strand, within ABIE53_004257at 431.399 kb on + strand, within ABIE53_004257at 431.400 kb on - strand, within ABIE53_004257at 431.400 kb on - strand, within ABIE53_004257at 431.400 kb on - strand, within ABIE53_004257at 431.651 kb on + strandat 431.709 kb on + strandat 431.777 kb on + strandat 431.777 kb on + strandat 431.777 kb on + strandat 431.777 kb on + strandat 431.777 kb on + strandat 431.778 kb on - strandat 431.778 kb on - strandat 431.778 kb on - strandat 431.778 kb on - strandat 431.944 kb on + strandat 431.944 kb on + strandat 431.944 kb on + strandat 431.944 kb on + strandat 431.944 kb on + strandat 431.944 kb on + strandat 431.944 kb on + strandat 431.944 kb on + strandat 431.944 kb on + strandat 431.944 kb on + strandat 431.945 kb on - strandat 431.945 kb on - strandat 431.945 kb on - strandat 431.945 kb on - strandat 431.945 kb on - strandat 431.945 kb on - strandat 431.945 kb on - strandat 431.945 kb on - strandat 431.945 kb on - strandat 431.945 kb on - strandat 431.947 kb on + strandat 431.947 kb on + strandat 431.948 kb on - strandat 431.948 kb on - strandat 431.948 kb on - strandat 431.993 kb on + strand, within ABIE53_004258at 431.994 kb on - strand, within ABIE53_004258at 431.994 kb on - strand, within ABIE53_004258at 431.994 kb on - strand, within ABIE53_004258at 431.994 kb on - strand, within ABIE53_004258at 432.214 kb on + strand, within ABIE53_004258at 432.541 kb on + strand, within ABIE53_004258at 432.541 kb on + strand, within ABIE53_004258at 432.542 kb on - strand, within ABIE53_004258at 432.542 kb on - strand, within ABIE53_004258

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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429,352 + -0.9
429,352 + -0.9
429,352 + +0.8
429,353 - +0.1
429,353 - +0.5
429,353 - +0.4
429,353 - -0.1
429,388 - -0.2
429,388 - -1.2
429,388 - +0.6
429,388 - -1.5
429,463 + -1.4
429,463 + +0.3
429,464 - -0.9
429,482 + -2.3
429,483 - -0.1
429,510 + +0.4
429,511 - -1.4
429,511 - +0.8
429,511 - -1.5
429,668 - ABIE53_004256 0.26 -2.3
429,668 - ABIE53_004256 0.26 +1.6
429,668 - ABIE53_004256 0.26 -1.2
429,726 + ABIE53_004256 0.35 +0.2
429,726 + ABIE53_004256 0.35 -0.2
429,726 + ABIE53_004256 0.35 +0.4
429,726 + ABIE53_004256 0.35 +0.8
429,727 - ABIE53_004256 0.36 -1.0
429,727 - ABIE53_004256 0.36 -0.3
429,757 - ABIE53_004256 0.40 -1.4
429,763 + ABIE53_004256 0.41 -0.7
429,763 + ABIE53_004256 0.41 +0.9
429,763 + ABIE53_004256 0.41 -0.1
429,763 + ABIE53_004256 0.41 -0.5
429,763 + ABIE53_004256 0.41 -1.5
429,764 - ABIE53_004256 0.41 +1.2
429,764 - ABIE53_004256 0.41 +0.4
429,765 + ABIE53_004256 0.42 +2.2
429,765 + ABIE53_004256 0.42 -1.9
429,766 - ABIE53_004256 0.42 -0.6
429,766 - ABIE53_004256 0.42 +0.1
429,766 - ABIE53_004256 0.42 -0.9
429,766 - ABIE53_004256 0.42 -1.4
429,800 + ABIE53_004256 0.47 -0.2
429,800 + ABIE53_004256 0.47 +0.6
429,800 + ABIE53_004256 0.47 -1.3
429,800 + ABIE53_004256 0.47 -0.0
429,800 + ABIE53_004256 0.47 -0.3
429,800 + ABIE53_004256 0.47 -0.1
429,800 + ABIE53_004256 0.47 -1.2
429,801 - ABIE53_004256 0.47 -0.7
429,801 - ABIE53_004256 0.47 +1.8
429,801 - ABIE53_004256 0.47 +0.2
429,837 + ABIE53_004256 0.53 -0.2
429,837 + ABIE53_004256 0.53 -0.6
429,837 + ABIE53_004256 0.53 +0.9
429,837 + ABIE53_004256 0.53 +1.6
429,837 + ABIE53_004256 0.53 -1.3
429,837 + ABIE53_004256 0.53 +0.0
429,838 - ABIE53_004256 0.53 +0.8
429,838 - ABIE53_004256 0.53 +1.4
429,845 + ABIE53_004256 0.54 +0.5
429,845 + ABIE53_004256 0.54 +0.6
429,846 - ABIE53_004256 0.55 -0.7
429,924 + ABIE53_004256 0.67 +1.9
429,924 + ABIE53_004256 0.67 +0.9
429,924 + ABIE53_004256 0.67 +0.6
429,924 + ABIE53_004256 0.67 -0.7
429,924 + ABIE53_004256 0.67 +0.8
429,924 + ABIE53_004256 0.67 -0.8
429,924 + ABIE53_004256 0.67 -0.3
429,925 - ABIE53_004256 0.67 -0.4
429,960 + ABIE53_004256 0.73 +1.1
429,960 + ABIE53_004256 0.73 -0.6
429,960 + ABIE53_004256 0.73 -0.6
429,960 + ABIE53_004256 0.73 -0.7
429,961 - ABIE53_004256 0.73 -0.1
429,961 - ABIE53_004256 0.73 -0.6
429,961 - ABIE53_004256 0.73 -0.4
429,961 - ABIE53_004256 0.73 -0.5
429,961 - ABIE53_004256 0.73 -2.2
429,961 - ABIE53_004256 0.73 +0.6
429,961 - ABIE53_004256 0.73 +0.8
430,090 - +0.2
430,090 - -0.9
430,128 + +0.9
430,180 + +1.0
430,181 - -1.1
430,181 - +0.4
430,181 - -0.6
430,220 + -0.3
430,271 + -1.2
430,271 + -1.3
430,271 + -0.4
430,271 + +0.2
430,271 + +1.2
430,272 - -0.9
430,272 - -0.0
430,272 - -1.1
430,501 - ABIE53_004257 0.24 -1.2
430,595 + ABIE53_004257 0.31 -0.0
430,596 - ABIE53_004257 0.31 +0.6
430,596 - ABIE53_004257 0.31 +1.0
430,643 + ABIE53_004257 0.34 -0.5
430,643 + ABIE53_004257 0.34 +1.2
430,643 + ABIE53_004257 0.34 +0.2
430,643 + ABIE53_004257 0.34 +0.2
430,644 - ABIE53_004257 0.34 -0.0
430,644 - ABIE53_004257 0.34 -0.8
430,644 - ABIE53_004257 0.34 -0.7
430,644 - ABIE53_004257 0.34 -2.0
431,257 + ABIE53_004257 0.77 -0.0
431,258 - ABIE53_004257 0.77 +0.6
431,258 - ABIE53_004257 0.77 -1.3
431,399 + ABIE53_004257 0.87 -2.2
431,399 + ABIE53_004257 0.87 +0.2
431,399 + ABIE53_004257 0.87 -0.0
431,400 - ABIE53_004257 0.87 -0.5
431,400 - ABIE53_004257 0.87 -0.0
431,400 - ABIE53_004257 0.87 +1.7
431,651 + -0.6
431,709 + -1.9
431,777 + -0.6
431,777 + +0.9
431,777 + +1.6
431,777 + +1.6
431,777 + +1.8
431,778 - -2.5
431,778 - +0.3
431,778 - +1.0
431,778 - +0.7
431,944 + -0.0
431,944 + +1.2
431,944 + -0.1
431,944 + +0.5
431,944 + +1.5
431,944 + +1.2
431,944 + -0.9
431,944 + -0.2
431,944 + +0.1
431,944 + +1.1
431,945 - +0.2
431,945 - +1.4
431,945 - -0.5
431,945 - -0.2
431,945 - -2.3
431,945 - -0.4
431,945 - -0.5
431,945 - -0.2
431,945 - -0.2
431,945 - -0.6
431,947 + -0.1
431,947 + -0.9
431,948 - -0.0
431,948 - +1.8
431,948 - +0.4
431,993 + ABIE53_004258 0.12 +2.2
431,994 - ABIE53_004258 0.12 +1.6
431,994 - ABIE53_004258 0.12 -1.2
431,994 - ABIE53_004258 0.12 -0.2
431,994 - ABIE53_004258 0.12 +0.1
432,214 + ABIE53_004258 0.28 -0.5
432,541 + ABIE53_004258 0.53 -0.5
432,541 + ABIE53_004258 0.53 +0.4
432,542 - ABIE53_004258 0.53 -1.2
432,542 - ABIE53_004258 0.53 -1.4

Or see this region's nucleotide sequence