Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003289

Experiment: butyrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	butyrate (C)
3,707,633	+		ABIE53_003287	0.68	+0.0
3,707,634	-		ABIE53_003287	0.68	-1.0
3,707,634	-		ABIE53_003287	0.68	+1.5
3,707,700	+		ABIE53_003287	0.75	-0.6
3,707,777	+		ABIE53_003287	0.83	-2.2
3,707,777	+		ABIE53_003287	0.83	+1.8
3,707,777	+		ABIE53_003287	0.83	-0.2
3,707,777	+		ABIE53_003287	0.83	-1.8
3,707,777	+		ABIE53_003287	0.83	-0.2
3,707,784	+		ABIE53_003287	0.84	+0.6
3,707,807	+		ABIE53_003287	0.86	+0.5
3,707,807	+		ABIE53_003287	0.86	-0.6
3,707,807	+		ABIE53_003287	0.86	+1.0
3,707,808	-		ABIE53_003287	0.86	-1.0
3,707,808	-		ABIE53_003287	0.86	-1.5
3,707,922	+				-0.2
3,707,941	+				-0.5
3,707,942	-				-2.8
3,707,942	-				+0.9
3,708,193	-		ABIE53_003288	0.55	-0.4
3,708,302	+		ABIE53_003288	0.79	+4.1
3,708,302	+		ABIE53_003288	0.79	+0.0
3,708,302	+		ABIE53_003288	0.79	-0.6
3,708,303	-		ABIE53_003288	0.80	-0.2
3,708,303	-		ABIE53_003288	0.80	-0.1
3,708,303	-		ABIE53_003288	0.80	+1.5
3,708,303	-		ABIE53_003288	0.80	+1.0
3,708,303	-		ABIE53_003288	0.80	-0.2
3,708,303	-		ABIE53_003288	0.80	+0.5
3,708,303	-		ABIE53_003288	0.80	+1.5
3,708,303	-		ABIE53_003288	0.80	-0.0
3,708,491	+				+0.3
3,708,491	+				-0.8
3,708,491	+				-0.2
3,708,492	-				+3.1
3,708,492	-				+1.7
3,708,492	-				+0.1
3,708,492	-				-1.0
3,708,492	-				-0.0
3,708,492	-				-1.2
3,708,492	-				+0.8
3,708,492	-				+0.0
3,708,492	-				-0.1
3,708,492	-				+0.4
3,708,496	+				+1.2
3,708,496	+				-0.8
3,708,497	-				-0.0
3,708,497	-				-0.9
3,708,497	-				+1.1
3,708,497	-				-0.4
3,708,497	-				+1.4
3,708,552	-				-0.5
3,708,552	-				+0.1
3,708,569	+				-1.0
3,708,570	+				-0.5
3,708,570	+				-1.8
3,708,570	+				+0.3
3,708,570	+				+0.1
3,708,570	+				-1.5
3,708,570	+				-0.2
3,708,570	+				+2.1
3,708,570	+				+0.8
3,708,570	+				-1.2
3,708,570	+				+0.4
3,708,570	+				-0.7
3,708,570	+				+0.2
3,708,570	+				-1.7
3,708,570	+				+1.0
3,708,570	+				-1.0
3,708,570	+				-0.3
3,708,570	+				-0.0
3,708,570	+				-1.3
3,708,570	+				-0.2
3,708,570	+				-0.3
3,708,571	-				+0.8
3,708,571	-				+1.0
3,708,571	-				-1.7
3,708,571	-				+0.4
3,708,571	-				-0.5
3,708,571	-				-0.5
3,708,571	-				+0.5
3,708,571	-				-0.2
3,708,571	-				+0.8
3,708,571	-				+0.3
3,708,571	-				+1.0
3,708,571	-				+0.3
3,708,571	-				-0.6
3,708,571	-				+1.1
3,708,571	-				-0.3
3,708,571	-				-1.2
3,708,571	-				-0.0
3,708,571	-				+0.1
3,708,572	+				+2.7
3,708,572	+				+1.1
3,708,572	+				-0.5
3,708,572	+				-0.9
3,708,572	+				-0.3
3,708,572	+				-0.5
3,708,572	+				+0.2
3,708,572	+				+0.3
3,708,572	+				+1.2
3,708,572	+				+0.0
3,708,572	+				+0.3
3,708,572	+				-1.1
3,708,572	+				+0.5
3,708,572	+				-0.3
3,708,572	+				-0.6
3,708,572	+				-0.3
3,708,572	+				-1.7
3,708,572	+				+0.5
3,708,572	+				+1.3
3,708,572	+				+0.5
3,708,573	-				-0.2
3,708,573	-				+1.5
3,708,573	-				-0.7
3,708,573	-				+0.6
3,708,573	-				+0.5
3,708,573	-				-2.1
3,708,573	-				-0.7
3,708,573	-				+0.3
3,708,573	-				-0.3
3,708,573	-				-0.9
3,708,573	-				+0.6
3,708,573	-				-0.4
3,708,573	-				+0.8
3,708,573	-				-0.5
3,708,573	-				-0.7
3,708,573	-				-0.1
3,708,573	-				-1.2
3,708,573	-				+0.7
3,708,573	-				-0.2
3,708,573	-				-1.5
3,708,573	-				+0.5
3,708,573	-				+0.5
3,708,582	+				-0.6
3,708,582	+				-0.8
3,708,583	-				-0.9
3,708,583	-				-0.3
3,708,583	-				-0.2
3,708,583	-				-0.0
3,708,692	+		ABIE53_003289	0.16	-0.0
3,708,692	+		ABIE53_003289	0.16	-0.7
3,708,692	+		ABIE53_003289	0.16	+0.3
3,708,692	+		ABIE53_003289	0.16	-0.5
3,708,692	+		ABIE53_003289	0.16	-1.5
3,708,692	+		ABIE53_003289	0.16	-0.8
3,708,693	-		ABIE53_003289	0.16	+0.3
3,708,693	-		ABIE53_003289	0.16	-0.7
3,708,856	-		ABIE53_003289	0.37	+1.1
3,708,856	-		ABIE53_003289	0.37	+0.4
3,708,856	-		ABIE53_003289	0.37	-0.6
3,708,996	+		ABIE53_003289	0.55	-0.4
3,708,997	-		ABIE53_003289	0.55	-1.0
3,708,997	-		ABIE53_003289	0.55	+0.2
3,708,997	-		ABIE53_003289	0.55	-0.8
3,708,997	-		ABIE53_003289	0.55	-2.4
3,708,997	-		ABIE53_003289	0.55	-0.7
3,709,119	+		ABIE53_003289	0.71	-1.3
3,709,120	-		ABIE53_003289	0.72	-0.1
3,709,120	-		ABIE53_003289	0.72	-0.8
3,709,306	+				+0.4
3,709,306	+				+1.4
3,709,307	-				-0.1
3,709,307	-				-0.4
3,709,307	-				-0.1
3,709,307	-				-1.2
3,709,307	-				+0.0
3,709,308	+				-1.7
3,709,308	+				+0.7
3,709,309	-				-1.4
3,709,379	+				-0.5
3,709,852	+				+1.7
3,709,852	+				+1.1
3,709,852	+				-1.3
3,709,852	+				+0.8
3,709,859	+				-0.9
3,709,859	+				+0.1
3,709,859	+				+0.4
3,709,859	+				-1.4
3,709,859	+				-0.3
3,709,925	+		ABIE53_003291	0.36	+0.4
3,709,925	+		ABIE53_003291	0.36	-1.4
3,709,925	+		ABIE53_003291	0.36	-1.1
3,709,925	+		ABIE53_003291	0.36	-1.9
3,709,925	+		ABIE53_003291	0.36	+3.1
3,709,926	-		ABIE53_003291	0.36	-0.3
3,709,926	-		ABIE53_003291	0.36	-0.3
3,709,933	+		ABIE53_003291	0.40	-0.5
3,709,933	+		ABIE53_003291	0.40	+2.4
3,709,996	+		ABIE53_003291	0.78	-0.6
3,709,996	+		ABIE53_003291	0.78	+1.0
3,710,009	+		ABIE53_003291	0.86	+0.1
3,710,009	+		ABIE53_003291	0.86	-0.6
3,710,009	+		ABIE53_003291	0.86	-0.6
3,710,010	-		ABIE53_003291	0.86	+1.0
3,710,030	+				+0.5
3,710,030	+				+0.1
3,710,030	+				-0.7
3,710,030	+				+1.0
3,710,030	+				-0.4
3,710,030	+				+1.2
3,710,030	+				+0.1
3,710,030	+				-0.5
3,710,031	-				+2.4
3,710,031	-				-0.8
3,710,031	-				+0.3
3,710,031	-				+0.8
3,710,159	+				-1.9
3,710,159	+				-0.0
3,710,159	+				+1.1
3,710,159	+				-0.5
3,710,159	+				-0.9
3,710,159	+				-1.3
3,710,159	+				+0.1
3,710,159	+				-1.4
3,710,159	+				+0.5
3,710,159	+				-0.2
3,710,160	-				+1.0
3,710,160	-				-0.8
3,710,160	-				-0.0
3,710,160	-				-0.0
3,710,172	+				-0.5
3,710,172	+				-0.7
3,710,172	+				-0.0
3,710,199	+				-0.9
3,710,214	+				+0.5
3,710,214	+				-0.6
3,710,214	+				+0.1
3,710,214	+				-0.3
3,710,214	+				-0.6