Experiment: MoYLS4 with Polymyxin B sulfate 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2797 and DvMF_2798 are separated by 64 nucleotides DvMF_2798 and DvMF_2799 are separated by 315 nucleotides DvMF_2799 and DvMF_2800 are separated by 155 nucleotides DvMF_2800 and DvMF_2801 overlap by 4 nucleotides
DvMF_2797: DvMF_2797 - hypothetical protein (RefSeq), at 3,541,454 to 3,542,044
_2797
DvMF_2798: DvMF_2798 - transcription activator effector binding (RefSeq), at 3,542,109 to 3,542,579
_2798
DvMF_2799: DvMF_2799 - histone family protein DNA-binding protein (RefSeq), at 3,542,895 to 3,543,170
_2799
DvMF_2800: DvMF_2800 - hypothetical protein (RefSeq), at 3,543,326 to 3,543,733
_2800
DvMF_2801: DvMF_2801 - Hydroxypyruvate reductase (RefSeq), at 3,543,730 to 3,545,088
_2801
Position (kb)
3542
3543
3544 Strain fitness (log2 ratio)
-2
-1
0
1 at 3541.946 kb on - strand, within DvMF_2797 at 3542.006 kb on - strand at 3542.041 kb on + strand at 3542.122 kb on - strand at 3542.137 kb on - strand at 3542.244 kb on - strand, within DvMF_2798 at 3542.600 kb on - strand at 3542.788 kb on + strand at 3542.830 kb on - strand at 3543.043 kb on + strand, within DvMF_2799 at 3543.361 kb on - strand at 3543.383 kb on + strand, within DvMF_2800 at 3543.435 kb on + strand, within DvMF_2800 at 3543.440 kb on + strand, within DvMF_2800 at 3543.677 kb on - strand, within DvMF_2800 at 3543.677 kb on - strand, within DvMF_2800 at 3543.798 kb on - strand at 3543.803 kb on - strand at 3543.927 kb on - strand, within DvMF_2801
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.0625 mg/ml remove 3,541,946 - DvMF_2797 0.83 -0.5 3,542,006 - -0.6 3,542,041 + -0.8 3,542,122 - -0.1 3,542,137 - +0.1 3,542,244 - DvMF_2798 0.29 -0.0 3,542,600 - -0.0 3,542,788 + -0.7 3,542,830 - -1.8 3,543,043 + DvMF_2799 0.54 -2.5 3,543,361 - -0.3 3,543,383 + DvMF_2800 0.14 -0.5 3,543,435 + DvMF_2800 0.27 +0.0 3,543,440 + DvMF_2800 0.28 -0.4 3,543,677 - DvMF_2800 0.86 -0.2 3,543,677 - DvMF_2800 0.86 -0.5 3,543,798 - -0.1 3,543,803 - -0.2 3,543,927 - DvMF_2801 0.14 +0.2
Or see this region's nucleotide sequence