Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2100

Experiment: MoYLS4 with Polymyxin B sulfate 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2099 and DvMF_2100 are separated by 506 nucleotidesDvMF_2100 and DvMF_2101 are separated by 329 nucleotides DvMF_2099: DvMF_2099 - glutamine synthetase, type I (RefSeq), at 2,616,009 to 2,617,352 _2099 DvMF_2100: DvMF_2100 - hypothetical protein (RefSeq), at 2,617,859 to 2,618,833 _2100 DvMF_2101: DvMF_2101 - major facilitator superfamily MFS_1 (RefSeq), at 2,619,163 to 2,620,602 _2101 Position (kb) 2617 2618 2619Strain fitness (log2 ratio) -2 -1 0 1at 2617.101 kb on + strand, within DvMF_2099at 2617.248 kb on + strandat 2617.264 kb on + strandat 2617.274 kb on + strandat 2617.491 kb on + strandat 2617.607 kb on + strandat 2617.628 kb on + strandat 2617.631 kb on - strandat 2617.645 kb on - strandat 2617.685 kb on + strandat 2617.693 kb on - strandat 2617.797 kb on - strandat 2617.853 kb on - strandat 2617.855 kb on + strandat 2617.870 kb on - strandat 2617.877 kb on - strandat 2617.925 kb on - strandat 2618.182 kb on + strand, within DvMF_2100at 2618.190 kb on - strand, within DvMF_2100at 2618.510 kb on - strand, within DvMF_2100at 2618.834 kb on - strandat 2618.893 kb on - strandat 2618.942 kb on + strandat 2618.950 kb on - strandat 2618.980 kb on - strandat 2619.085 kb on - strandat 2619.576 kb on - strand, within DvMF_2101

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.0625 mg/ml
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2,617,101 + DvMF_2099 0.81 -2.1
2,617,248 + -1.3
2,617,264 + -1.2
2,617,274 + -1.8
2,617,491 + -0.3
2,617,607 + -0.2
2,617,628 + -0.1
2,617,631 - -0.3
2,617,645 - -1.0
2,617,685 + -0.3
2,617,693 - -1.1
2,617,797 - -0.3
2,617,853 - -0.2
2,617,855 + -0.1
2,617,870 - -0.5
2,617,877 - -0.4
2,617,925 - +0.1
2,618,182 + DvMF_2100 0.33 +0.0
2,618,190 - DvMF_2100 0.34 -0.8
2,618,510 - DvMF_2100 0.67 +0.9
2,618,834 - -0.2
2,618,893 - -0.2
2,618,942 + -0.8
2,618,950 - -0.2
2,618,980 - +0.1
2,619,085 - +0.6
2,619,576 - DvMF_2101 0.29 -0.5

Or see this region's nucleotide sequence